Hemiscyllium ocellatum (epaulette shark): 132824362
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Entry
132824362 CDS
T09720
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04010
MAPK signaling pathway
hoc04120
Ubiquitin mediated proteolysis
hoc04140
Autophagy - animal
hoc04144
Endocytosis
hoc04620
Toll-like receptor signaling pathway
hoc04621
NOD-like receptor signaling pathway
hoc04622
RIG-I-like receptor signaling pathway
hoc05132
Salmonella infection
hoc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132824362 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
132824362 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
132824362 (traf6)
04140 Autophagy - animal
132824362 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
132824362 (traf6)
04621 NOD-like receptor signaling pathway
132824362 (traf6)
04622 RIG-I-like receptor signaling pathway
132824362 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
132824362 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
132824362 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hoc04131
]
132824362 (traf6)
04121 Ubiquitin system [BR:
hoc04121
]
132824362 (traf6)
Enzymes [BR:
hoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132824362 (traf6)
Membrane trafficking [BR:
hoc04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
132824362 (traf6)
Ubiquitin system [BR:
hoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
132824362 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-TRAF_2
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
SlyX
TRAF6_Z2
zf-RING_5
U-box
TMF_DNA_bd
DM
RING_XB3-XBAT31
TRAF3_RING
CENP-F_leu_zip
zf-RING_11
DUF7310
Sina_ZnF
Tropomyosin
DUF948
DUF16
BLOC1_2
Zn_ribbon_ACC
PspA_IM30
ATG16
Motif
Other DBs
NCBI-GeneID:
132824362
NCBI-ProteinID:
XP_060694728
LinkDB
All DBs
Position
18:19917548..19965459
Genome browser
AA seq
550 aa
AA seq
DB search
MVDCDSGRDSTFQSSCCTVSSGTMDDCSNHGQYSQSVYEEMQGYDVEFDPPLENKYECPI
CLMALREAVQTPCGHRFCRGCIVKSIRDAGHKCPVDNEMLTETQLFPDNFAKREILSLTV
KCPNKGCYQKMELRHLEEHQEQCEYAFVDCHQCDALLRRKELQEHMDSDCPKRRVACENC
AMLMAFQDKKGHDQNCPLANVTCEYCNMELIREQMQNHYNLDCPKAPVPCTFSAFGCPEK
MQRNDLAMHLQDYTQAHMRMMAQTLRSVSSGLSSHVPSIDILNAEDDFQPVTLPGSLQAS
HSQSSPALGVPPSCDCSPLIQNLRETVQQLEGRLVRQDHQIRELTAKMGTQSGQVGDLKR
SVRALEKHVSELEAHQCNGIFIWRVENFASHLQAQAEDQPVVLHSPGFYTGKPGYKLCLR
LHLQSPSAQRCSNYISLFVHTMQGEYDSYLSWPFQGTIRLSILDQSEGPIRQNHEEIMES
KPELLAFQRPTQCRNPKGFGYVTFLHLKALQQRTYVKDDMLLVRCEVVTRSDLNWMRKDD
FQARSAEGGL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggtggactgtgacagtggccgtgattccacattccagagctcctgctgcaccgtgagc
agtgggacaatggacgattgcagcaaccatggacagtactcccagtctgtctacgaggag
atgcagggctatgatgtggaatttgacccaccgctggagaacaaatacgagtgtcccatt
tgtctgatggcgttaagggaggcagtgcagacaccctgtggtcacaggttctgtagaggc
tgcattgtaaaatctatcagggatgctggacacaagtgccctgtggataatgagatgttg
accgaaacccaactttttccagataattttgcaaaacgggaaattctttccctgacagtc
aaatgtcccaacaagggctgctatcagaaaatggagctacgacatttggaggaacaccag
gagcagtgcgaatacgcctttgttgactgtcatcaatgtgatgctttgctcaggcgaaag
gaactgcaggagcacatggactcggactgtcctaagagacgcgttgcctgtgagaactgt
gccatgctgatggcctttcaggacaaaaagggtcatgatcagaattgccctttggccaac
gttacctgtgaatactgcaacatggagctaatccgagaacagatgcagaaccattataac
ctggactgtccaaaagcacccgtcccctgcacttttagtgcctttggctgcccagaaaag
atgcagaggaatgacctggcgatgcacctacaggattacacacaggcccacatgcggatg
atggcccagacgctgcgcagtgtaagctcaggactcagctcccatgtgccatccattgac
atcctgaatgcagaagatgacttccagccagtgacactccctgggtcactgcaggcctca
cactctcagtcatcgccagcactcggggtcccaccgtcttgtgactgctcacctctgatc
cagaatctgagggagaccgtccagcaactggagggccgtctggtccggcaggaccatcag
atccgggagctcaccgctaagatggggacacagagcggccaggtgggggatctgaaacgg
agtgtccgggcgctggagaaacacgtcagtgagttggaggcccaccagtgcaatgggatt
ttcatctggagggtggaaaacttcgccagccacctgcaggcgcaggcagaggatcagcca
gtggtgctgcacagccctggcttttatacaggcaagccagggtacaagctctgcctccgc
ctgcacttgcagtctcccagtgcccagcgctgctccaactacatctcactctttgtacac
accatgcagggcgaatatgacagctacctgagctggccctttcagggcaccatccggctc
tctatacttgaccagtcggagggcccaatcaggcagaaccacgaggagatcatggagagc
aaacccgagctgctggccttccagcggcctactcagtgccgcaacccgaagggctttggc
tacgtcaccttcctgcacctcaaagccctccagcagcgcacctacgtgaaagatgacatg
ctgctggtccggtgtgaggttgtgacacgttctgatctgaactggatgaggaaggatgac
ttccaagcccgctcagcagaaggtggtctgtga
DBGET
integrated database retrieval system
