Halothermothrix orenii: Hore_02300
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Entry
Hore_02300 CDS
T00838
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hor
Halothermothrix orenii
Pathway
hor03030
DNA replication
hor03410
Base excision repair
hor03420
Nucleotide excision repair
hor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hore_02300
03410 Base excision repair
Hore_02300
03420 Nucleotide excision repair
Hore_02300
03430 Mismatch repair
Hore_02300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hor03032
]
Hore_02300
03400 DNA repair and recombination proteins [BR:
hor03400
]
Hore_02300
Enzymes [BR:
hor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hore_02300
DNA replication proteins [BR:
hor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hore_02300
DNA repair and recombination proteins [BR:
hor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hore_02300
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hore_02300
MMR (mismatch excision repair)
DNA ligase
Hore_02300
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hore_02300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
tRNA-synt_1c_C
DUF8054_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ACL68991
UniProt:
B8D122
LinkDB
All DBs
Position
236182..238194
Genome browser
AA seq
670 aa
AA seq
DB search
MASKVEQEIRDLREKIRYHEYRYYVLDDPEISDAEFDELIQRLIDLEEKHPGLVTPDSPT
QRVGGEPLDKFDKVEHRVPMLSLGNAFNEGDLTNFARRIYRLLDTGKIDFVVEHKIDGLS
AILTYQGGRLIRGATRGNGVVGEDVTANIKTIPSVPLRLKKDVDIEVRGEVYIKKDDFSK
LNERRLKKGEEPFANPRNAAAGSIRQLDPRLAAARPLSFIAYDVVAYEGEGLQTHVGALE
LLRELGFKVNWYRKCDDITEVVNICKDWVDKREELPFEIDGMVIKVNELGLREQLGATAK
SPRWAIAYKFPAQQKTTVVKDIIISVGRTGALTPTAVLEPVEVDGSTVSRATLHNEDEIR
RKDVRIGDHVLVQKAGDVIPEVVKVIKSKRDGSEQIFHMPETCPACGGEVVREEGEAVLR
CVNVTGCPAQRREGILHFVSRNAMNIDGVGPALIDQLLEKGLIEDYADLYYLKKEDLIPL
ERMGEKSATNAIEAIRASKDRPLFRVIFALGIRHVGLGVARVLTEKYRSLSDLMRASGEE
LVAIDEIGPTIARSIIEFFKEPHNREVINKLKEAGVRLEEKENGKEEQNLYLSGKTFVFT
GKLDGFTRSEARDKVIAAGGKVTSSVSRKTDYVVVGDSPGSKYDKARELGVTILDEDKFK
EVLKAGDNNG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaaagtagaacaggaaataagggatttaagggagaagatacggtatcatgag
taccggtattatgttctagatgacccggaaatatctgatgctgaatttgatgaattgata
cagaggcttattgatctggaggaaaagcaccctggcctggtgaccccggattctcctact
caacgggtcggtggagagcctcttgataaatttgataaagtagagcaccgggttcccatg
ctgagccttggtaatgcatttaatgagggtgatttaacgaattttgccaggcggatttac
cggctccttgatacaggcaaaatagacttcgtggtggaacataaaatcgatgggttatca
gcgatattaacctatcagggtggtaggttgatccggggagcaacccgcggtaatggagtg
gtgggggaagatgttaccgccaatataaagaccatcccttctgtacccctcaggttaaaa
aaagatgttgatatcgaagtccggggtgaggtatatataaaaaaagatgattttagtaaa
ttaaatgaaaggagattgaagaagggagaagaaccctttgctaatccccggaatgcagcg
gcaggttcaattagacagcttgaccccaggctggctgccgcccgtcccctgtcctttatt
gcctacgatgtagttgcctatgaaggagaaggtttacagacccatgtcggggccctggaa
ttactccgggagcttggttttaaggtgaactggtatcgtaaatgtgatgatattacagag
gtagtaaatatttgtaaggactgggtggataaaagagaagaattaccctttgagatagat
ggtatggttattaaggtcaatgaactgggtctgagagaacagctgggagctactgccaaa
agcccccgctgggccattgcttataaattccctgcccagcagaagacaactgttgttaaa
gatattattatttcggtaggccggaccggggccttaacaccgacagctgtcctggagcct
gttgaggttgatggttctacagtcagcagggcaactctccataatgaagatgaaataagg
agaaaagatgttagaataggggatcatgtcctggttcaaaaagcaggtgatgtcatccct
gaagtggttaaggttataaagagtaaacgggatggcagtgaacagatatttcacatgccc
gaaacctgccctgcctgtggtggggaggttgtgagggaagaaggtgaagctgttttaagg
tgtgttaatgtgaccgggtgccctgcccagagacgggaaggaattcttcactttgtctcc
cggaatgccatgaatattgatggcgtggggccagccctgatagaccagcttttagaaaaa
gggttgatagaagattatgctgatttatattaccttaaaaaagaggatttgattcctctg
gaaagaatgggggaaaaatcagctactaatgccattgaggctatcagggccagtaaggac
aggcctctctttagagttatttttgccctggggatcaggcatgtcggtctgggggtagcc
cgggttttaactgaaaaataccggtcattgtctgatttaatgagggcatccggggaagaa
ctggtggctattgatgaaattggtcctactatagcccggagtattattgaattttttaag
gagccccataaccgggaggttattaataaattaaaagaagccggggtgagacttgaggag
aaggaaaatggaaaagaagagcagaatttatacctgtcaggaaaaacatttgtctttacc
ggtaaattagatggttttacccggagtgaagccagagataaggttatagcagcaggagga
aaggttacttcaagtgtcagccggaaaaccgactatgtagtggtcggagatagtcccggt
tccaaatatgataaagcccgggagttgggggtaactattttagatgaagataaatttaaa
gaagtgttaaaagcgggggataataatggttag
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