Hafnia paralvei: AL518_18350
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Entry
AL518_18350 CDS
T05667
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpar
Hafnia paralvei
Pathway
hpar03030
DNA replication
hpar03410
Base excision repair
hpar03420
Nucleotide excision repair
hpar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL518_18350 (ligA)
03410 Base excision repair
AL518_18350 (ligA)
03420 Nucleotide excision repair
AL518_18350 (ligA)
03430 Mismatch repair
AL518_18350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpar03032
]
AL518_18350 (ligA)
03400 DNA repair and recombination proteins [BR:
hpar03400
]
AL518_18350 (ligA)
Enzymes [BR:
hpar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AL518_18350 (ligA)
DNA replication proteins [BR:
hpar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AL518_18350 (ligA)
DNA repair and recombination proteins [BR:
hpar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AL518_18350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL518_18350 (ligA)
MMR (mismatch excision repair)
DNA ligase
AL518_18350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AL518_18350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
AMH19787
LinkDB
All DBs
Position
complement(4102164..4104200)
Genome browser
AA seq
678 aa
AA seq
DB search
MTSTTGQQLQQQLDQLRTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELITP
DSPTQRVGAAPLSAFSQVRHEVPMLSLDNVFDDESYLAFDKRVHDRLKTAEPLTFCCELK
LDGLAVSLLYEDGVLVRGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVF
MPLAGFEAMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGEL
PASHYARLQQFKAWGLPVSDRVKRCTGSDEVLKFYRQVEQDRPTLGFDIDGVVIKVDSIE
IQEQLGFVARAPRWATAFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSN
ATLHNADEIDRLGLRIGDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPLYCPVCGSDV
ERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKEYVKTPADLY
RLTAGILTGLDRMGPKSATNLVNALAKSKETTLARFLYALGIREVGEATAANLAAHFGSL
EALREADVEALKSVQDVGEVVAKHVRHFLGEEHNQKVIDELISDEIGIHWPAPQVIVAEE
IDSPFAGKTVVLTGSLSLMPRDEAKDRLAALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQ
ELGIPVIDEAEMIRLLGL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacttctacgaccggacaacaacttcaacagcaactcgaccagctgagaactgcgttg
cgccatcatgagtatcagtatcatgtgctagatgccccagaaatacccgacgccgaatat
gatcgtttgatgcgtgagctgcgtgcgttggaagagcaacaccctgaacttatcacgcct
gattctccaacccaacgagtgggtgccgcgccgttgtctgcatttagccaagtgcgccat
gaagtgcctatgctttcgctggataacgttttcgatgatgaaagctatttagcctttgac
aagcgtgttcacgaccgattgaaaaccgcagagccattaactttttgctgcgagcttaaa
cttgatggcttggccgttagcctactctatgaagatggtgtcttggttcgaggagcgact
cgcggcgacggcacgaccggtgaagatataacagctaatgtgaaaacgatccgtgcgatc
cctctgcgattgcaaggcgataatatccctcggcgtgtggaagttcgtggcgaagttttt
atgccgctagccggttttgaagccatgaatgaagaagcgcgtcgcaaagacggcaaagtt
ttcgccaatccgcgaaatgccgcagcgggatcgctgcgccagctcgatccgcggatcacg
gctaaacgtccgctgacattcttctgctatggcgttggtttgatggacggtggcgaactg
ccagccagccactatgcgcgtttacagcagtttaaagcctggggtttaccggtgagcgat
cgcgtaaaacggtgtactggcagcgatgaggtgctgaagttttatcgtcaggttgagcag
gatcgtccaacgctaggttttgatatcgacggtgtcgtcatcaaagttgatagcattgag
attcaggaacagctcggctttgtcgcgcgagcacctcgttgggcgacggcgtttaagttc
cccgctcaggaacaaatgacggtggtaaacggcgttgaatttcaggttggccgtacaggg
gcaatcacgcccgtggctcgtctagagcccgttttggtcgcaggcgttattgtgagtaac
gccacgctacataacgctgatgaaattgaccgtcttggcctgcgaattggtgacaccgtt
attgttcgtcgtgccggtgacgtgataccacaggtagtcggcgtcgttgaagcgcagcgt
cctgagaatgcacaggagatcgtttttccgctgtattgcccagtatgcggttctgacgtt
gagcgtgtggaaggcgaggccgtggctcgctgtaccggtgggttgatctgcggtgcgcag
cgcaaagagtcgctgaagcacttcgtttcacgccgcgcgatggacgttgatggtatgggc
gacaaaatcatcgaacaattggtcgaaaaagagtatgtgaaaacaccggccgatctctat
cgcctgacggcggggatcctcacggggcttgatcgcatgggaccgaagtctgcgacgaat
ctggttaatgccttagcgaaatcgaaagaaacgacgttagcaagattcctatatgcatta
ggtattcgcgaagtaggcgaagccaccgcggcgaatttggctgcacactttggctcactc
gaggctttgcgtgaagctgatgttgaagcgctgaaaagcgtacaggacgtgggtgaagtc
gtggctaagcatgtgcgccattttctcggtgaagagcataatcagaaagtgatcgatgag
ctgatcagcgacgagattggtatccattggcctgcaccgcaggtcattgtggctgaagag
attgatagcccatttgcaggcaaaaccgtggtattaaccggctcgctgagcctgatgccg
cgtgatgaagctaaagatcgtctggctgcgttaggcgctaaagtcagtggcagcgtatcc
aagaaaaccgatatggttattgcaggcgaagcggcaggatctaaattagctaaggctcaa
gagctcggtattccggtgattgatgaagcggaaatgattcggctgttagggctgtaa
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