Helicobacter pylori B38: HELPY_0757
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Entry
HELPY_0757 CDS
T00950
Symbol
lig
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpb
Helicobacter pylori B38
Pathway
hpb03030
DNA replication
hpb03410
Base excision repair
hpb03420
Nucleotide excision repair
hpb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HELPY_0757 (lig)
03410 Base excision repair
HELPY_0757 (lig)
03420 Nucleotide excision repair
HELPY_0757 (lig)
03430 Mismatch repair
HELPY_0757 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpb03032
]
HELPY_0757 (lig)
03400 DNA repair and recombination proteins [BR:
hpb03400
]
HELPY_0757 (lig)
Enzymes [BR:
hpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HELPY_0757 (lig)
DNA replication proteins [BR:
hpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HELPY_0757 (lig)
DNA repair and recombination proteins [BR:
hpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HELPY_0757 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HELPY_0757 (lig)
MMR (mismatch excision repair)
DNA ligase
HELPY_0757 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HELPY_0757 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
HHH_5
RNA_ligase
BRCT_2
DNA_ligase_ZBD
RabGAP-TBC
Motif
Other DBs
NCBI-ProteinID:
CAX29287
LinkDB
All DBs
Position
742052..744022
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIAYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNDIQANSPTQ
KVGAITTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKVYPSASFVCSPKLDGVSLNL
LYHHGKLISATTRGNGLEGELVTNNAKHIANIPHFIAYNGEIEIRGEVIISKKDFDALNQ
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPK
FACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPIEIAGAMVNRATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEAEFLEMEGFGV
EMAHSLVNFYASNQEFIRSLFDLLNPKNSDMAEEKQKSSSVFSDKTIVLTGTLSKPRQEY
AQMLENLGAKIASSVSTKTNFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKKLD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgcatatttaaacaccctatcgcac
cattattacaaccttgatgagtcaatcgtaagcgatgcagtctatgatgaactttaccaa
gaattaaaagcttatgaagaagaaaaccctaatgatattcaagccaattcccctacccaa
aaagtgggggctattaccaccaattcgttcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaagcgaattgcaagcgtggttgcaacgcattttaaaa
gtttatcctagcgcttcgtttgtgtgctcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaccatggcaagctaataagcgcaaccactaggggtaatggcttagaaggagag
cttgttactaacaacgctaaacacatcgctaatatcccccattttatcgcttataatgga
gaaatagaaatcagaggtgaagtgatcatttctaaaaaggattttgacgctttgaatcaa
gagcgcttaaacgctaatgaacctctattcgctaaccccagaaacgccgcatcagggagt
ttgaggcaacttgatagcgaaatcactaaaaagcgcaaattgcaattcattccttggggt
gtgggcaagcattctttaaattttttaagctttaaggagtgtttggattttatcgtctcg
ttgggttttagcgccattcaatatttaagcctaaacaaaaaccaccaagaaatagaagac
aattaccacaccttgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattgggtattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacaccaaaatcataggagtcatc
aaccaagtggggcgcagcggggcaatcacaccagtcgctcttttagaacctatagaaatt
gctggggctatggttaatagagcgaccttgcacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggtcgttgtcattagaagcggcgatgtgatccctaaaatcatc
aagcctttagaaacttacagagacggctcgcaacacaaaattgaacgccccaaagtttgc
cctatatgttcgcatgagcttttgtgcgaagagatttttacttattgtcaaaaccttaat
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaggacgctttaaacatt
caaggcttgggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgcc
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaatttaaaattaaa
aaagctcaaaacctattagacgctattttaaaaagcaaaaaccctcccttatggcgtttg
atcaacgctttagggattgagcatatcggtaagggagcgagtaaaacgctggccagatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcactctttagtcaatttttatgcgagcaatcaggaatttattcgatcgtta
tttgacttattgaaccctaaaaacagcgatatggctgaagaaaagcaaaaaagctcttct
gttttcagtgataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaattgcttcaagcgtgagcactaaaaccaat
tttttaatcgctggagaaaaccccggctcaaaactcgctctagcaaaaaaacatggcgtg
agcgttttgaatgaagaagaattattaaagcgccttaaaaaattggattga
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