Halopseudomonas pelagia: EAO82_16025
Help
Entry
EAO82_16025 CDS
T07735
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpeg
Halopseudomonas pelagia
Pathway
hpeg03030
DNA replication
hpeg03410
Base excision repair
hpeg03420
Nucleotide excision repair
hpeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EAO82_16025 (ligA)
03410 Base excision repair
EAO82_16025 (ligA)
03420 Nucleotide excision repair
EAO82_16025 (ligA)
03430 Mismatch repair
EAO82_16025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpeg03032
]
EAO82_16025 (ligA)
03400 DNA repair and recombination proteins [BR:
hpeg03400
]
EAO82_16025 (ligA)
Enzymes [BR:
hpeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EAO82_16025 (ligA)
DNA replication proteins [BR:
hpeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EAO82_16025 (ligA)
DNA repair and recombination proteins [BR:
hpeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EAO82_16025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EAO82_16025 (ligA)
MMR (mismatch excision repair)
DNA ligase
EAO82_16025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EAO82_16025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QFY57738
UniProt:
A0AA92IJT8
LinkDB
All DBs
Position
complement(3460528..3462903)
Genome browser
AA seq
791 aa
AA seq
DB search
MTQTQDLAARAIELREQIDLHNHRYYVLDEPSIPDAEYDRLFNELKAIEEAQPDLITPDS
PTQRVGGAALSAFGTVAHEVPMLSLGNAFDEQSMRDFDRRVREGLDLPAGDLFGAGEAVE
YCCEPKLDGLAVSLLYEHGQLVRGATRGDGSTGEDISSNVRTIRNVPLKLRGQGWPAVLE
VRGEVFINKAGFEALNERAREAGSKTFANPRNAAAGSLRQLDPNITRARPLEFCCYGIGR
VDGELPDSQVGILHQLREWGLSISKELKLAAGVDECLEYYRDIGERRAVLGYEIDGVVFK
VNKLAYQRELGFRAREPRWAIAHKFPAMEEITELLDVEFQVGRTGAVTPVARLRPVLVAG
VTVSNATLHNMDEVARLGLMIGDSVIIRRAGDVIPQVMQVVADRRPADARPVEIPEQCPV
CGSDVERTQLIKRGRGRETISEGAVYRCVGRLTCQAQLKQAIIHFVSRRALDIDGLGEKI
VEQLVDTGLVSSPADLYLLTYEQVLALEGFAEISTKNLLGSIQDSKQPTLARFIYALGIP
DVGEETAKLLARSLGSLQRISQALPEVLVYLPDVGMEVAHEIHAFFDDEHNQTVIRQLLE
RGLVLQEEGELNPELAASVSLAEFITRLEIPGVAKTGAERLAASFTSLEAIMQADWLELK
RVERFTEKAQTGLRDYFADAQRRERVLQIEQQLKAFGMHWDSPRAAQSEGMPLSGQTWVL
TGSLEAFSRDVAKDYLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKAEQLNVPVLDEQGL
LALLNDHGIEP
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaactcaggacctggctgcccgcgcgattgaattgcgtgagcagattgacctc
cacaaccatcgctattacgtgctcgatgaaccttcgattcccgatgcggaatacgatcgc
ctgttcaatgagctcaaggcaatcgaagaagcccagcctgacctgatcacgccggattcg
ccgacccaacgcgtgggtggcgctgcgctgtctgcgttcggcacggtagcgcatgaagtg
cccatgctcagcctgggcaatgccttcgatgagcaaagcatgcgcgactttgatcggcga
gttcgtgaaggtctggatctgccggcgggtgatctgtttggcgctggtgaagcggtggaa
tattgttgtgagcccaagctcgatggtctggcggtgagtctgctttacgagcatgggcaa
ctggtgcggggcgctactcgaggcgatggcagcacgggcgaggatatctccagcaacgtg
cgcactatccgcaatgtgccgctgaaactgcgcgggcagggttggccggccgtactcgag
gtgcgcggtgaagtctttatcaataaggccggttttgaagcgctgaacgagcgtgcccgc
gaagccggcagcaaaacctttgccaatccgcgcaatgccgcggcgggttcgctgcgccaa
ctggatcccaatattactcgcgcacggccgttggaattctgctgttacggcataggccgt
gtcgacggcgaactgccggattctcaagtaggcattctgcatcagcttcgcgagtggggg
ctgagcatcagcaaggagctcaagctcgccgcaggggtggatgagtgcctggagtattac
cgggatatcggtgagcgccgcgctgtgctgggctacgagattgacggcgtcgtgttcaag
gtcaacaaactggcttatcagcgcgaactgggtttccgtgcccgtgagccgcgctgggct
atcgcgcataaattcccggcgatggaagagatcaccgagctgctcgacgtcgagtttcag
gtcgggcgcaccggtgcggtcacgcctgtagcacgtctgcgccccgtgctggtcgccggt
gtcactgtatccaacgccactttgcacaatatggacgaagttgcacggctggggttgatg
attggcgacagcgtcatcatccgccgcgctggcgacgtgattccgcaggtcatgcaggtg
gtggctgataggcggccggcggacgcgcgaccggtggaaattcccgagcaatgcccagtg
tgcggctcggatgttgaacgtacgcaactgatcaaacgtggccggggccgggagactatc
agtgaaggcgcggtgtatcgctgcgtagggcggttgacctgtcaggcgcagctcaagcag
gcgatcattcactttgtctcgcggcgcgcgctggatatcgatggactgggtgagaagatt
gtcgagcaattggtcgataccgggctggtcagctcgcctgccgatttgtatctgctgacc
tacgaacaggtgctggcgctggaaggctttgccgaaatctccaccaagaacctgcttggc
tcaattcaggacagcaaacaacctacgttggcgcggtttatctatgcgctgggtattcct
gatgtcggtgaggaaaccgccaagctcctggcgcgctcgctgggttcgctgcagcgcatc
agtcaagccttgcctgaggtactggtgtatctgccggatgtggggatggaagtcgcccac
gagatccatgcgttctttgacgacgagcataatcagacggtgatacgccagttgctggag
cgtggcctggtgctgcaggaggagggcgagctcaatccggaactggccgccagcgtcagc
ctcgccgaatttatcacccgactggaaattcctggggtagcgaagaccggggccgagcgg
ttggccgccagttttaccagcctggaagcgatcatgcaggctgactggcttgagctgaag
cgagtggagcgttttaccgagaaggcccagaccggcctgcgcgactacttcgccgatgcc
cagcgccgcgagcgggtactgcagattgagcagcaactgaaggccttcggtatgcactgg
gatagccctcgtgccgcgcagagcgaaggtatgccattgagcggccagacctgggtgctg
actggcagcctggaagccttctcacgtgatgtggccaaggattatctggaaagcctgggg
gccaaggtggcgggcagtgtatccgccaagacccattgtgtggtggctggaccgggggcg
ggcagcaagctggccaaggctgagcagctcaacgtcccggtgctggatgagcagggcctg
ctggctctgctcaacgaccatggtatcgagccttga
DBGET
integrated database retrieval system
