Halosimplex pelagicum: HZS54_12020
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Entry
HZS54_12020 CDS
T06697
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpel
Halosimplex pelagicum
Pathway
hpel03030
DNA replication
hpel03410
Base excision repair
hpel03420
Nucleotide excision repair
hpel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZS54_12020 (ligA)
03410 Base excision repair
HZS54_12020 (ligA)
03420 Nucleotide excision repair
HZS54_12020 (ligA)
03430 Mismatch repair
HZS54_12020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpel03032
]
HZS54_12020 (ligA)
03400 DNA repair and recombination proteins [BR:
hpel03400
]
HZS54_12020 (ligA)
Enzymes [BR:
hpel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZS54_12020 (ligA)
DNA replication proteins [BR:
hpel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZS54_12020 (ligA)
DNA repair and recombination proteins [BR:
hpel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZS54_12020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZS54_12020 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZS54_12020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZS54_12020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
RNA_ligase
HHH
DNA_ligase_ZBD
PTS_IIB
Motif
Other DBs
NCBI-ProteinID:
QLH82293
UniProt:
A0A7D5TBI3
LinkDB
All DBs
Position
complement(2440467..2442233)
Genome browser
AA seq
588 aa
AA seq
DB search
MSRSQSAQENPYLAPPLPQFKGVAELSAKEAATQAEQLQEAVRYHDRRYYVDGDPVIADS
EYDRLFTRLQELESEFDVDDEGSPTQRVGASPIDEFDTATHSTELLSIEQSREKSAVRGF
GDRVVRETDGSVSFVCEPKLDGISLALYYEDGLLQQVVTRGDGEEGEVVTPNAKTVPSIP
LRLPVESPERLVVRGEMVMPRKAFQQYNKEQIEVGDDPFANPRNAVAGTIRQKDPSIVAE
RPLQFLVFDVLESSQPLATRWEANQFLEDLGFVSPPRLEQAETIEDAVAYRNETLEVRDE
MDVAIDGVVLKVNDHDHQDTLGRTSSHPRYCFAYKFPPRTEETALRDVVLQVGRTGRVTP
VALLDPVDVGGVTVSRASLHNPAQIAELGAGIGDRVWVERAGDVIPQVAEVVEDRADGHF
GFPETCPVCSSNIERDGPMAVCTGGLSCPSQVRRSIEHYVSRKGLDIDGVGEQTVDHFLE
AELIEDVADLYALAKDDITSLEGYGDQSAANLVEAIDGSREPALHDFLTALGIPEVGETA
ARDLAREFGSVDAFREAESSDLTTVDDVGEVTARRIREYLQMEVNRPW
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagccagtcagcccaggagaatccatacttggccccgccgctcccccagttc
aagggtgtagcggaattgagtgctaaggaggcggcaacgcaagccgaacagctacaggaa
gcggttcggtatcacgaccgtcgctactacgtagacggggacccggtgattgccgattct
gagtacgatcgactgttcacacggttgcaggaactcgaatcggagttcgatgtcgatgat
gaaggaagtccgacgcagcgggtcggtgcctcacctatcgatgagttcgatacggcgact
cactcgacagaactgctctccatcgaacagtcgcgagagaagtccgccgtccgtgggttc
ggcgaccgtgtggttcgcgagacagatgggtcggtgtccttcgtatgcgagccgaaactg
gacggaatctccctcgctctctactatgaggatggccttctccagcaggtcgtcacgcgg
ggtgacggtgaagaaggtgaggtcgtaacaccgaatgcgaagactgttccgtcgatacca
cttcggttaccggttgaatccccagaacggctcgttgtacgtggagagatggtgatgccg
cgcaaagcgttccagcagtacaacaaggaacagattgaagtcggagatgacccgttcgct
aacccacgcaacgcggtggccggaactatccgccagaaagacccgtccatcgtcgcagaa
cggccgctccagttcctcgtgttcgacgtgctggagtccagccagccactcgcaacacga
tgggaggccaatcagttccttgaggacctcggcttcgtgtctccaccccggttagaacag
gcggagaccatcgaggatgcagtcgcataccggaacgagactctcgaagtccgagacgag
atggacgtcgcgatcgatggggttgtcctcaaggtgaacgatcacgaccaccaggacaca
ctcggcagaacgtcgagccacccgcgatactgcttcgcgtacaagtttccgccacgaact
gaagaaacggctctccgcgatgttgtcctacaggtggggcggacgggtcgggtgacgccg
gtcgccttgctcgaccctgttgatgtcggtggcgtaacggtctcgcgggcaagcctccac
aaccccgcgcagatcgccgaactgggggcaggcatcggcgaccgggtttgggtggaacgg
gcaggtgatgtcatcccgcaggtcgctgaagtcgtcgaggaccgcgctgacggccacttc
gggttccccgagacctgtccggtgtgtagtagcaacatcgagcgtgacggcccgatggct
gtctgtacgggcggcctctcgtgcccgtcgcaagtccgtcggtccatcgaacattacgtc
tcccggaagggactggacatcgacggtgtcggagaacagaccgtcgaccacttcctcgaa
gcggaactcatcgaagacgttgcagacctctacgccctcgccaaggacgatattacgtct
ctcgaaggctacggggaccaatcggcagcgaacctcgttgaggcaatcgacgggagtcga
gaaccggcgctgcacgacttcctcacggcgttgggtattccagaggtcggtgaaacagct
gctcgcgatctcgcccgagagttcggttctgtggacgctttccgcgaagccgagtcgtca
gacctaacgacagttgatgacgttggagaggtgactgctcggcggattcgagagtatctg
cagatggaggtgaatcggccttggtga
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integrated database retrieval system