Helicobacter pylori J99: jhp_0558
Help
Entry
jhp_0558 CDS
T00020
Symbol
lig
Name
(GenBank) DNA LIGASE
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpj
Helicobacter pylori J99
Pathway
hpj03030
DNA replication
hpj03410
Base excision repair
hpj03420
Nucleotide excision repair
hpj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
jhp_0558 (lig)
03410 Base excision repair
jhp_0558 (lig)
03420 Nucleotide excision repair
jhp_0558 (lig)
03430 Mismatch repair
jhp_0558 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpj03032
]
jhp_0558 (lig)
03400 DNA repair and recombination proteins [BR:
hpj03400
]
jhp_0558 (lig)
Enzymes [BR:
hpj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
jhp_0558 (lig)
DNA replication proteins [BR:
hpj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
jhp_0558 (lig)
DNA repair and recombination proteins [BR:
hpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
jhp_0558 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
jhp_0558 (lig)
MMR (mismatch excision repair)
DNA ligase
jhp_0558 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
jhp_0558 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AAD06141
UniProt:
Q9ZLM1
LinkDB
All DBs
Position
complement(618855..620825)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQANSPTQ
KVGATATNEFSKNPHLMRMWSLDDVFNQNELRAWLQRILKVYPNASFVCSPKLDGVSLNL
LYQHGKLISATTRGNGLEGELVTNNAKHIANIPHSIAYNGEIEIRGEVIISKEDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGKHSLHFLRFKECLDFIVS
LGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAIQKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMAHSLVNFYASNQEFIRSLFELLNPKSSDTAEEKQKSSSVFSDKTIVLTGTLSKPRQEY
AQMLENLGAKIASSVSAKTDFLIAGENAGSKLALAQKHGVSVLNEEELLKRLKELD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgaacccatcgtaagcgatgcggtctatgatgaactttaccaa
gaattaaaagcttatgaagaagaaaaccctaatcgcattcaggctaactcccctacccaa
aaagtgggggctactgccaccaatgagttcagtaaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaacgaattgcgagcgtggttgcaacgcattttaaaa
gtttatcctaacgcttcattcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctaataagcgcgaccactaggggtaatggcttagaaggagag
cttgttactaacaacgctaaacacatcgctaatatcccccattctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcatttctaaagaggattttgacgccttgaataaa
gagcgcctaaacgctaacgaacccctattcgctaaccccagaaatgctgcatcagggagt
ttaagacagcttgatagcaatatcactaaaaagcgcaaattgcaattcatcccttggggc
gtgggcaagcattctttacatttcctaagatttaaggagtgtttggattttattgtctcg
ttaggttttagcgctattcaatatttaagcctgaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtggatgaattggatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacaccaaaattgtaggagtcatt
aaccaagtggggcgcagtggggcgatcaccccggtcgctctcttagagcctgtggaaatt
gctggagctatggttaatagagcgaccttacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggtggtcgtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagagacggctcgcaacaaaaaatcatgcgccccaaagtttgc
cccatatgctcgcatgaacttttatgcgaagagatttttacctattgtcaaaaccttaat
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaggacgctttaaacatt
caaggcttgggcgataaagtcatagagcaactttttgaagaaaaactcattttcaacgcc
ttggatctgtatgctttaaaattagaagacttaatgcggctagacaaattcaaaatcaaa
aaagctcaaaatctattagacgctattcaaaagagcaaaaaccctcctttatggcgtttg
atcaacgctttagggattgagcatattggtaaaggagcgagtaaaacgctagccaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttggaaatggaaggctttggggtg
gaaatggcgcattctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgagttgttaaaccctaaaagtagcgatacggctgaagaaaagcaaaaaagctcttct
gttttcagtgataaaacgattgttctaaccggcacgctttctaaaccacggcaagaatat
gctcaaatgttagaaaatttaggggcaaaaattgcttcaagcgtgagcgctaaaaccgat
tttttaatcgctggagaaaacgccggctcaaaactcgctctggcacaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaaacgccttaaggaattggattaa
DBGET
integrated database retrieval system
