Helicovermis profundi: HLPR_21980
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Entry
HLPR_21980 CDS
T09891
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hprf
Helicovermis profundi
Pathway
hprf03030
DNA replication
hprf03410
Base excision repair
hprf03420
Nucleotide excision repair
hprf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HLPR_21980 (ligA)
03410 Base excision repair
HLPR_21980 (ligA)
03420 Nucleotide excision repair
HLPR_21980 (ligA)
03430 Mismatch repair
HLPR_21980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hprf03032
]
HLPR_21980 (ligA)
03400 DNA repair and recombination proteins [BR:
hprf03400
]
HLPR_21980 (ligA)
Enzymes [BR:
hprf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HLPR_21980 (ligA)
DNA replication proteins [BR:
hprf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HLPR_21980 (ligA)
DNA repair and recombination proteins [BR:
hprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HLPR_21980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HLPR_21980 (ligA)
MMR (mismatch excision repair)
DNA ligase
HLPR_21980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HLPR_21980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
HHH
Zn_ribbon_NUD
RNA_ligase
HHH_3
E1-E2_ATPase
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
BEP29867
UniProt:
A0AAU9EGH7
LinkDB
All DBs
Position
complement(2472722..2474710)
Genome browser
AA seq
662 aa
AA seq
DB search
MQEIEKKIKELKSLIIYHENKYYNEDNPEISDFEYDELMRELIELEVKYPNLKTTDSPSV
RVGGVALKNFNQVNHKVKLLSLDNSYNKNDLINFDLRINKEVKIDEYIVEYKIDGLSVAL
TYENGNFVKGATRGNGEIGEDVTENLKTIRSIPLKLKEPLNIIVRGEVFISKKQFALINE
IQETEGKEQFANPRNIAAGSLRQLDSKVAAKRHLDILIFDLLEGDLNLNKHDEILDKLEA
IGFKVNNHKKCNDINEVAKYCESMISERHNLDYEIDGMVIKVNDINSRNSLGIKAKSPKW
AMAYKFPAEEKETVVKDIVVQVGRTGVLTPKAEFEAVEVAGSTIRWATLHNQDFIDEKDV
RIGDTVFIQKAGDVIPAVVRVVKEKRTGEEKKFKLPLYCPECGGTTLRKEGEVALRCTNE
NCPAKLRRSIIHFVSRVAMNIDGVGEAVVTELIKNGFIKNYSDLYFLKDKKDELLNLERM
AEKSVDNMLESIENSKSNDLSKLINAFGINLIGAKAAKTISKKLKTMDNIIDASFATLNS
IDEIGEKMANSIIEYFSHEDNLQRIERLKKANVNMVSLENEKDEKELIFKDLTFVVTGTL
KKYKREEIKGLIESLGGKASSSVSKKTSYLVYGDKAGSKKEKAISLGVKTISEEEFKEAF
NL
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaatagaaaaaaaaataaaagaacttaagagtttaataatttatcatgaaaat
aaatattacaatgaagataatccagaaatttcagattttgaatatgatgaattgatgaga
gaattaattgaactcgaagtaaaatatccaaatcttaaaaccacagattctccaagtgtt
cgagttggaggagttgctttaaaaaattttaatcaggtaaatcacaaagtaaagctactt
agccttgataattcttataacaaaaatgatttaattaattttgatttaagaataaacaaa
gaagtaaaaatagatgagtatatcgttgaatacaaaatagacggtttaagtgttgcatta
acttatgaaaatggtaattttgtaaaaggggctacaaggggaaatggcgaaattggtgaa
gatgtaactgaaaatcttaaaacaattcgaagtataccattaaaattaaaagaacctcta
aatatcattgtaagaggagaagtttttatttccaagaaacaatttgctttaattaatgaa
attcaagaaacagaaggaaaagaacaatttgcgaatcctagaaatattgctgcaggttca
ctaagacaactagattcaaaggttgcagcgaaacgacatcttgatattttgatatttgat
ttattagaaggagatttaaacttaaacaaacacgatgaaattttagataaacttgaagct
attggatttaaagtaaataaccataaaaagtgtaatgatataaatgaagtcgcaaaatac
tgtgaatcaatgattagcgaaagacataatttggattatgaaatagatggaatggttatt
aaagttaacgatattaatagtcgtaattctcttggaattaaagctaaaagtccaaagtgg
gcaatggcatataaatttcctgctgaagaaaaagagactgttgttaaagatatagttgtt
caagttggtagaactggtgtattaactccaaaagcagaattcgaagctgttgaagttgct
ggtagtactattaggtgggctactcttcataatcaagactttattgatgaaaaggatgtt
agaattggtgacactgtttttattcaaaaagcaggagatgttattccagcggtagtaaga
gttgtaaaagaaaaacgtacaggtgaagaaaagaaatttaaacttcctctttactgtcct
gaatgtggaggtactactttaagaaaagaaggggaagtcgcattaagatgtactaatgaa
aattgtcctgcgaaacttagaagaagtattattcattttgtttcgagagtcgccatgaat
attgatggagttggtgaagctgtagttacggaacttattaaaaatggatttattaaaaac
tattctgatttatattttttgaaagataaaaaagatgaactattaaatcttgaaagaatg
gctgaaaaatcagttgacaatatgcttgaatcgattgagaattctaaaagtaatgatcta
agtaagttgattaacgcttttggaattaatctaattggagcaaaagctgctaaaactatt
tcgaagaaactaaaaactatggataacataattgatgcaagttttgctactttaaattca
attgatgaaattggagaaaagatggctaatagcattatagaatatttttcacatgaagat
aacttacaaagaatagaaaggttaaaaaaagcaaatgtaaatatggtttctcttgaaaat
gaaaaagatgaaaaagaactaatatttaaagatttaacatttgtagttactggaacatta
aaaaagtataagagagaagaaataaaaggactaattgaatcattaggtgggaaagcaagt
tcaagtgtaagtaaaaaaacttcttatttagtatatggcgataaagcaggttcaaagaaa
gaaaaagcgataagccttggagtcaaaacgattagtgaagaggaatttaaagaagctttt
aatctgtag
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