Halomonas profundus: LMS44_00300
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Entry
LMS44_00300 CDS
T08361
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpro
Halomonas profundus
Pathway
hpro03030
DNA replication
hpro03410
Base excision repair
hpro03420
Nucleotide excision repair
hpro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMS44_00300 (ligB)
03410 Base excision repair
LMS44_00300 (ligB)
03420 Nucleotide excision repair
LMS44_00300 (ligB)
03430 Mismatch repair
LMS44_00300 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpro03032
]
LMS44_00300 (ligB)
03400 DNA repair and recombination proteins [BR:
hpro03400
]
LMS44_00300 (ligB)
Enzymes [BR:
hpro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMS44_00300 (ligB)
DNA replication proteins [BR:
hpro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMS44_00300 (ligB)
DNA repair and recombination proteins [BR:
hpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMS44_00300 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMS44_00300 (ligB)
MMR (mismatch excision repair)
DNA ligase
LMS44_00300 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMS44_00300 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH
HHH_5
HHH_2
DUF3701
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UEQ04341
LinkDB
All DBs
Position
65243..66919
Genome browser
AA seq
558 aa
AA seq
DB search
MLLSVRIWLLGSLIWLVTFSAQAAQCPDWPEERLSRESKALAEQVHRWDTAYHDEGAALI
DDALYDQAVERLATWQRCLGTVPDHRPLTRVTRSSGTLEHPAAQRGLDKADDDGVRRFTS
RREDLWIQPKVDGVAITLRYENGELVEAVSRGDGERGQDWTARARQLPAIPNTLPEPISA
VLQGELYWRLSQHVQSRSPASGARGAVAGAMAQASPTAATLERIGLFVWGWPDGPTAMQE
RLARLSELGFDSADYTHPLDDRHDAGYWRDSWFNGPLPFATDGVVIKQAERPGVRRWSSS
PPEWAIAWKYPAQQALAEVRGIEFRVGRTGRVTPLVWLNPVLLEGRRISRVSLGSLERWE
SLDVRPGDQVAISLAGLTIPQLTEVVWHTQERSPLSPPSPQRFNLLSCFELTPGCDDQLL
ARLSYLGEQLGMQGIGEGTWQALMDAGVVTHLLDWLDVEPRQLQQAYGIGEATAETLLEQ
FQVAKGKSFSAWLSALGAPPGSESVRGDWDELAGYLREQWQAVPGVGPVRADALVAFFSH
PEIQHMARQLNEAGVAGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgagtgtacgaatttggctattgggtagcctgatctggcttgtcactttttcc
gcacaggctgcccaatgccctgattggccggaggagcgcctaagccgcgaaagcaaggcg
ctggctgagcaggttcaccgctgggacactgcctaccatgacgagggcgccgcgctgatc
gatgatgccctttacgaccaagcggttgagcgcctagccacttggcagcgttgcctgggc
actgtaccggatcatcgcccgcttacacgcgttacacgtagcagcggcactcttgagcat
ccggctgcgcagcgtgggcttgataaagccgatgacgatggcgtcagacgttttaccagc
cgccgcgaagacctgtggatccagcccaaagtggacggcgtggcgattacgttgcgctat
gaaaatggcgaactggtcgaagccgttagccgtggcgatggcgagcggggccaggattgg
acggcccgtgcccggcaactccctgccattcccaatacgctacccgagcctatttctgca
gtactccaaggcgagctgtattggcggttaagccaacacgtgcagtcgcgttcacccgca
tcgggtgcacggggtgccgtggcgggagcaatggcacaagcctcccccacagcggccacc
cttgagcgtattggcctgtttgtctggggctggcccgatggccctaccgcaatgcaggaa
cgtttagcacggctaagtgaactgggctttgatagcgctgactacactcatccgctggat
gaccgccatgatgccggttattggcgcgatagttggtttaacgggccgttgccgtttgct
accgacggggtggtgattaagcaagccgagcgacccggtgtacgccgctggtcatcatca
ccgcctgaatgggccattgcctggaaatatcccgcccagcaggcgctagcggaagtgcgc
ggcattgagtttcgcgttgggcgcactgggcgtgtgacgccgctggtgtggcttaatccg
gtgctgctggaggggcggcgtattagccgcgtctcgttaggctcactggagcgctgggag
tcactggatgtccgtcccggtgaccaagtggcgatttcgctagcgggattaacgattccc
cagttaaccgaggtggtgtggcacacccaggagcgctcgccgctgtcaccgccttcaccc
cagcgctttaacctgctgagctgctttgaattaacgcccggctgcgatgatcaattgctg
gcgcggcttagctaccttggcgagcagcttggtatgcagggtatcggtgaaggtacttgg
caagcgctaatggatgcgggcgtagtcacgcatttactggactggctggatgtcgaaccg
cgccagctgcaacaggcctacggcattggtgaggcgaccgctgaaacgttactggaacag
tttcaagtcgccaagggcaagtcgttttcggcctggttaagcgcgctgggggcgccgcca
ggtagcgagtcggttcgcggggattgggatgagctagcgggctacctgcgcgaacagtgg
caagccgttcccggcgttggcccggttcgcgctgacgcgctggtagcattttttagccac
cccgagatacagcacatggctcgacagcttaacgaagcaggtgtggctggtttttag
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