Henckelia pumila: 140866829
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Entry
140866829 CDS
T11037
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
hpum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140866829
09123 Folding, sorting and degradation
03018 RNA degradation
140866829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140866829
03041 Spliceosome [BR:
hpum03041
]
140866829
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140866829
mRNA degradation factors
5'-3' decay
Lsm complex
140866829
Spliceosome [BR:
hpum03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
140866829
Complex C
U2 snRNP components
140866829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
U6-snRNA_bdg
Motif
Other DBs
NCBI-GeneID:
140866829
NCBI-ProteinID:
XP_073127984
LinkDB
All DBs
Position
4:138567712..138569702
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AA seq
97 aa
AA seq
DB search
MGSEEEITVKEPLDLIRLSLDERIYVKLRHDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTTRRMVPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgaagaggagattacagtgaaggagccattggacctcattcgtctcagtctc
gacgagcgcatctacgtcaaacttcgccacgatcgcgagcttcgcggcaagcttcatgcc
tatgatcagcatttaaatatgattctgggagatgttgaagagattgttactactgtggag
atcgatgatgaaacatatgaggaaattgtgaggacaaccaggcgtatggtaccatttcta
tttgtcagaggagacggtgtcattttggtttcgcctccactgcgaacagcctga
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