Henckelia pumila: 140890786
Help
Entry
140890786 CDS
T11037
Name
(RefSeq) ABC transporter I family member 20-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140890786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140890786
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140890786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA
AAA_15
AAA_30
TsaE
ORC-CDC6-like
ATP-synt_ab
Zeta_toxin
AAA_23
AAA_24
DUF3584
RsgA_GTPase
nSTAND3
NACHT
PduV-EutP
AAA_28
Motif
Other DBs
NCBI-GeneID:
140890786
NCBI-ProteinID:
XP_073154937
LinkDB
All DBs
Position
3:complement(43531144..43535454)
Genome browser
AA seq
329 aa
AA seq
DB search
MAVQEENWRPTVEINNLSFTYPGIDGHPPPGSAPLIDEFSLTLHSGDRCLLVGSNGAGKT
TLLKIIGGKHMVDQEMVRVFGRSTFHDTALTSSGVLSYLGGEWRREVAFAGFDVPIQMDI
SAEKMIFGVAGIHPQRREELIKVLGVDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE
ITVDLDVLARSDLLGFLKKECEERGATIIYATHIFDGLDDWPSHIAYVARGKLQLVMPMN
KIKEISKLSLMRTVESWLRKERDDERQRRKERKASGTPEYDKKVEGSRVAGDPARAAVRV
LNNGWAAGRLNSTVAGEESFSLSSNRVLR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaggaggagaactggcggcccacggtggagatcaacaacctcagcttcact
tacccaggaatcgacggccatcctccgccgggttccgcccctttgatcgatgaattttca
ctcactctccactccggcgatcgttgtcttcttgttggttcaaatggcgcggggaaaaca
actttactgaaaataatcggtgggaagcatatggtggatcaagagatggtaagggttttc
ggaagatccacatttcatgacacagcattgacgtcttcaggagtcctctcttatcttggt
ggcgagtggagacgagaagttgcttttgctggttttgatgttccaattcagatggatatt
tcggctgagaaaatgatatttggggttgcaggaatccatccccaaagacgagaagaattg
atcaaggtcttgggtgttgacttgtcgtggagaatgcataaagtatctgatggtcaaaga
agaagggttcaaatatgtatgggccttctaaagccattcaaggtactattgctcgatgaa
ataacagttgacttagatgtgcttgcacggtctgaccttttaggatttctaaagaaagaa
tgtgaagaacggggtgccacaataatttacgcaacacatatttttgatggtctcgatgac
tggccatcgcatatcgcttacgtggctcgtggaaagttgcagctagtgatgccaatgaat
aaaatcaaagaaattagcaagttgtcactgatgagaactgtggagagttggctgagaaaa
gagagagacgatgagcggcagcgaaggaaagagagaaaagctagtggtactccggaatat
gataaaaaagtcgaaggcagccgtgtagctggtgatccagcacgcgctgctgtccgcgtg
ctaaataacgggtgggctgctgggaggctgaattcaactgtagctggtgaagaaagcttc
tccttgagctctaacagggtcctcagataa
DBGET
integrated database retrieval system
