Henckelia pumila: 140891270
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Entry
140891270 CDS
T11037
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hpum Henckelia pumila
Pathway
hpum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
140891270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpum03400
]
140891270
Enzymes [BR:
hpum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
140891270
DNA repair and recombination proteins [BR:
hpum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
140891270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
140891270
NCBI-ProteinID:
XP_073155783
LinkDB
All DBs
Position
3:complement(90741610..90763527)
Genome browser
AA seq
1215 aa
AA seq
DB search
MADTKFSVMVSLFNWIQKSKSSSVKRSKFRKFLDTFCRPNNGDDYFSAIRLILPSLDRER
GSYGLREHVLATILIDALGMSREAPDSQRLLNWRKGGPKSGAFAGNFSLVAAEVLQRRQG
MASGGLTIKELNELLDQLATRENRVEKTSVLSVLITKTNAQEMKWIIMIILKDLKLGISE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSLRHKRQDIEVGKPVRPQLAMRVSNSAVA
WKKFHGKEVVVECKFDGDRIQIHKNGALINFFSRNFLDHPEYIHGMSDVINENILVDRCI
LDGEMLVWDKSANRFAEFGSNQEIAKAAKEGLDGDRQLCYVAFDILYVGDTSVIHQSLKE
RQQHLKKIVKPKAGRLEILVPNGGLNAHCPAGEPCWSRIAHNVDDIERFFKETIENRDEG
IVLKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAE
RPAPNTYPRRFVSFCRVGTGLSDEELDAVVTKLKPYFRKYESSKKAPPSFYQVTNNSKER
PDVWVESPEKSIVLSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVEL
VHSSNGTTQKGTDYAVEDNKPKRTKLSRGVKKNVSAVPSHFMQTDVSQVKGESSIFSNVV
FYFVNVPSSHSLDSLHKMVVENGGAFSMNLNNSVTHCIASESKGIKFQAAKHHGDVIHCS
WFIDCCSKKMLLPLQPKYYLFLSDITKKRLQEEIDEFFDAYYLDINTEDLKQILKDIAKI
EDPNSIEYYRKKLCPKEEWARFHGCCIYFHLPKQLLKNMNRKTPLELVMRRMKIEVSIGG
GSVTETLHHATHLVIVTYPQLDVDFDTLLSSFMEAERRLLHNKNLQIVKSEWLENCFEKL
QKLPEESYSLKPSGFGQSLPESDDEHNVSKEDYSSYSNMGKRDASPPPDKREKWSKISAM
ADKPRLVNLPPRSIKRKRGSSSGNNTRKEKSIVNHPRRTRARIGNKPAKISENELDEGAS
LDEKKASENSGVHCGIPEMVEDKVKSGYSRPRRTRAQIRNKPAKIGRNEFDPDGSSDERT
IKNNLEVSEASHEGSDCVGKPIPHIQMEVLVEEPEAPERGQPVELTVAECSGSRTQSNDQ
VTDTLDPVQAMLLNMLPILSTQKTDTSPAIIEEVKFRGADQTQDEEKLPSNADTKLVTKR
KVSYKDVANQLLKDW
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacgaagttcagtgtgatggtcagcctgttcaattggattcagaagagcaaa
tcctcctcggtcaagcgctccaagttccgcaagtttcttgacacattctgccgccccaac
aacggcgacgactacttctccgccattcggttgatactcccaagcctcgatcgagagcgt
ggatcctacggcctccgcgagcacgtcctcgccaccatcctcatagatgcccttggaatg
tcgcgtgaggctcctgactcccaacgtctcctcaactggaggaagggaggccctaaatct
ggcgcctttgctggaaacttctctcttgttgcagctgaggtgctacagaggaggcagggc
atggcttcaggtggccttacaataaaagaattgaatgagttgcttgatcagttggctaca
agagaaaatagggtagagaagacatcagttctttctgtgttgattacgaaaacaaatgct
caggaaatgaagtggataataatgataattcttaaagatctcaagttgggcattagtgag
aagagcatctttcatgaatttcaccctgatgctgaggacctgtttaatgtcacctgtgac
ctgaaactggtttgtgaaaagttacgagatcgaagtttgagacataaacgacaggatatt
gaagttggcaaaccagttcgccctcaactagctatgcgagtcagcaattccgcggttgca
tggaaaaagtttcatggcaaggaagttgttgttgagtgcaaattcgacggtgatcgcatc
caaatccataaaaatggagcactgataaatttcttctcgaggaactttcttgatcaccca
gaatacatacatggcatgtcagacgttataaatgagaatatccttgttgacaggtgtatt
cttgatggtgaaatgttggtttgggacaaatctgcgaatcgatttgcagagtttggttcc
aatcaggaaatagccaaggctgcaaaggaggggcttgatggtgatcggcagttgtgctat
gttgcatttgacattctttacgttggagataccagtgttatccaccaaagcttgaaggag
agacaacagcatcttaagaaaattgtcaaacctaaagcaggtcggttggagattttggtt
cctaatggcggtctcaatgctcattgccctgctggggaaccttgttggtcacgaattgct
cataatgttgatgacattgaaagattttttaaagaaaccattgagaacagagatgaagga
attgttctgaaagatcttggctccaaatgggaaccaagtgatcgaagtgggaagtggctg
aagctgaagcctgattatattcgcgcaggctcggatttagatgttcttatcatagggggc
tactacggatctgggcgtcgtggaggagaggttgcacaattccttgttggtcttgcagag
cgtcctgccccaaacacatatcctagacgatttgtgtccttctgcagagtgggtacaggg
ctctctgacgaggagctggacgctgttgtgactaaattgaagccatatttcaggaaatat
gaaagttcgaaaaaggcaccaccaagcttctaccaagttacaaataactcgaaggagagg
ccagatgtctgggttgaaagcccagaaaagtcgatcgtcctttccatcactagtgatatt
cgaacaatcagatctgaggtttttgcagctccatatagcttgagatttcctcgaattgat
cgagtgagatatgacaagccttggcatgaatgtcttgatgtgcaatcttttgttgaattg
gtacattcaagtaatggtaccacccaaaaggggacagattatgcagttgaggataacaag
ccaaaacgtacaaagctgtctagaggagtgaaaaagaatgtttctgctgttccttcccat
ttcatgcagacagatgtttcgcaagttaagggagagagttcaatattttcaaatgtggtt
ttctactttgtaaatgtaccttcgtcccattcccttgattctctgcacaaaatggtggtt
gaaaatggtggtgctttctcgatgaatctgaacaattcggttactcactgtattgcttct
gagagtaaaggaatcaagtttcaggctgcgaagcaccatggagatgttattcactgctca
tggttcattgattgttgctcaaagaagatgcttcttcctttacagccaaaatactatctt
ttcctctctgacattacgaaaaaaagattgcaagaagaaattgatgaattttttgacgct
tactatttggatatcaatacagaggatctcaaacagatcctaaaagacatagctaagatt
gaagatcccaactcaattgagtattacaggaaaaagctctgtccgaaggaagaatgggct
cgctttcatggttgctgcatttactttcaccttccgaagcaattattaaaaaatatgaac
cggaaaactccattggaacttgtaatgagaaggatgaaaattgaggtttccattggtggt
ggaagtgttactgagactcttcaccatgctactcatttagtaatcgtgacttatccacaa
cttgatgtggactttgatacgttattgagtagtttcatggaggcagagaggcgtctcctg
cacaataaaaatttgcaaattgtcaagtcagagtggttggagaactgcttcgagaagctc
cagaagttgccagaggagagttacagtttgaaaccctcgggctttggccagtctttacca
gagtcggatgatgaacacaatgtaagtaaagaagattacagtagctactctaatatggga
aaaagggatgcatctcctcctcctgataaacgtgagaaatggagcaaaatctctgctatg
gcagataagcctagattagtcaacttgcctcccagaagtataaaaagaaaacggggaagt
tcaagtggaaataatacgagaaaggaaaaatcaattgttaatcaccctcgaagaacaaga
gcacggattggaaacaaacctgctaagatctctgaaaatgaattggatgaaggtgcttct
ttagatgagaagaaagcatccgaaaacagtggagtgcattgtgggattcctgagatggtt
gaagataaagtaaaatcaggttacagtcgtcctcgaagaacaagagctcagattaggaac
aagcctgcaaagatcggcaggaatgagtttgatccagatggttcatcagatgagcgaact
atcaaaaacaacttggaagtcagtgaagcaagccatgagggctcagactgcgtgggcaag
cccatccctcatattcaaatggaagttctagtggaagagcctgaagcgccagaaagaggc
caacctgttgaactgaccgttgctgaatgcagtgggagcagaacacagagcaacgatcaa
gttacagacacacttgatccggtccaagccatgctgctaaacatgttaccaattctttca
acccagaaaaccgatactagtcctgccattattgaagaggttaaatttagaggtgctgat
caaactcaagacgaggaaaaattgccctcaaatgcggatacaaaactagttacaaaaagg
aaagtcagctacaaggatgtcgctaaccaactgctcaaggattggtaa
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