Helicobacter pylori v225d: HPV225_0622
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Entry
HPV225_0622 CDS
T01899
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpv
Helicobacter pylori v225d
Pathway
hpv03030
DNA replication
hpv03410
Base excision repair
hpv03420
Nucleotide excision repair
hpv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPV225_0622 (ligA)
03410 Base excision repair
HPV225_0622 (ligA)
03420 Nucleotide excision repair
HPV225_0622 (ligA)
03430 Mismatch repair
HPV225_0622 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpv03032
]
HPV225_0622 (ligA)
03400 DNA repair and recombination proteins [BR:
hpv03400
]
HPV225_0622 (ligA)
Enzymes [BR:
hpv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPV225_0622 (ligA)
DNA replication proteins [BR:
hpv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPV225_0622 (ligA)
DNA repair and recombination proteins [BR:
hpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPV225_0622 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPV225_0622 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPV225_0622 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPV225_0622 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_5
HHH_2
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
ADI34701
LinkDB
All DBs
Position
complement(608195..610165)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQ
KVGATTPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVSATTRGNGLEGELVSANAKHIANIPHAIAYNGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAIQKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMVRSLVNFYASNQEFIRSLFDLLNPKNSDMAKEKQESSSVFNHKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAKKHGVSVLNEEELLKRLKEFD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgatcccatcgtaagcgacgccgtctatgacgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaagccaattcccctacccaa
aaagtgggggctactacccccaattcgttcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaatgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctagtgagtgctaccactaggggcaacggcttagaaggggaa
ttagtgagcgcaaacgctaaacacatcgctaatatcccccacgctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattcgccaaccctagaaacgccgcatcagggagt
ttgaggcagcttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcctaagctttaaggagtgtttggattttattgtttcg
ctaggctttagcgctattcaatacttaagcctaaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattaaagaaagggagggctttttcgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacacaaaaattgtaggagtcatt
aaccaagtggggcgcagcggggcgatcacaccggtcgctgttttagagcctgtagaaatt
gctggagctatcattacgaaagcgaccttacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgtggtcattagaagcggcgatgtgatccctaagatcatc
aaacctttagaatcttatagggacggctcgcaacataaaattgaacgccccaaagtttgc
cctatatgttcgcatgagcttttatgcgaagagatttttacttattgtcaaaacctcaat
tgcccggcaagattgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgct
ctggatttgtatgctttaaaattagaagatttaatgcgactagacaaatttaaaattaaa
aaagctcaaaatctattggacgctattcaaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatattggcaagggagcgagtaaaacgctggctaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggtgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttgttgaaccctaaaaacagcgatatggccaaagaaaagcaagaaagctcttct
gttttcaatcataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttggaaaatttgggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcaaaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaagcgccttaaagaatttgattaa
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integrated database retrieval system
