Helicobacter pylori 2018: hp2018_0603
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Entry
hp2018_0603 CDS
T01914
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpw
Helicobacter pylori 2018
Pathway
hpw03030
DNA replication
hpw03410
Base excision repair
hpw03420
Nucleotide excision repair
hpw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
hp2018_0603 (ligA)
03410 Base excision repair
hp2018_0603 (ligA)
03420 Nucleotide excision repair
hp2018_0603 (ligA)
03430 Mismatch repair
hp2018_0603 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpw03032
]
hp2018_0603 (ligA)
03400 DNA repair and recombination proteins [BR:
hpw03400
]
hp2018_0603 (ligA)
Enzymes [BR:
hpw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
hp2018_0603 (ligA)
DNA replication proteins [BR:
hpw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
hp2018_0603 (ligA)
DNA repair and recombination proteins [BR:
hpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
hp2018_0603 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
hp2018_0603 (ligA)
MMR (mismatch excision repair)
DNA ligase
hp2018_0603 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
hp2018_0603 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
Nlig-Ia
HHH_2
PTCB-BRCT
HHH_5
RNA_ligase
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
ADZ51298
LinkDB
All DBs
Position
complement(605497..607467)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDESIVSDAVYDELYQELKAYEEENPNHIQANSPTQ
KVGATATNEFSKNPHLMRMWSLDDVFNQNELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVSATTRGNGLEGELVTNNAKHIANIPHSIAYNGEIEIRGEVIIAKEDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSTIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELDIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMHPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAIQKSKNPPLWRLINALGIEHIGKGASKTLAKYGLHVLEKSEAEFLEMEGFGV
EMAHSLVNFYASNQEFIRSLFDLLNPKSSDTTEEKQKSSSVFSDKTIVLTGTLSKPRQEY
AQMLENLGAKIASSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKELD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccagaaagaatatttagaaagaattgaatacttaaacaccctatcgcac
cattattacaaccttgatgaatccatcgtaagcgatgcggtctatgatgaactttaccaa
gaattaaaagcttatgaagaagaaaaccctaatcatattcaagccaattcccctacccaa
aaagtgggggctactgccaccaatgagttcagtaaaaaccctcatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaacgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagtgcttcattcgtgtgctcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagttagtgagcgcgaccactaggggtaatggcttagaaggggag
cttgttactaacaacgctaaacacatcgctaatatcccccattctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcattgctaaagaggattttgacgccttgaataaa
gagcgcctaaacgctaacgaacccctattcgctaaccctagaaacgccgcatcagggagt
ttgaggcagcttgatagcgaaatcactaaaaagcgcaaattgcaattcatcccttggggc
gtgggcaagcattctttgaattttctaagcttcaaggagtgtttggattttattgtctcg
ttaggttttagcaccattcaatacttaagcctaaacaaaaaccaccaagaaatagaagaa
aactaccacaccctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattggatattcaaaaggagctaggctacacgcaaaaatcccccaaa
ttcgcttgcgcttataaattcccggctctagaaaaacacaccaaaattgtaggagtcatt
aaccaagtggggcgcagcggggcgatcacaccggtcgctctcttagagcctgtagaaatt
gctggggctatggttaatagagcgaccttgcacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggtggtcgtcattagaagcggcgacgtgatccctaaaatcatc
aagcctttagaatcttatagagacggctcgcaacaaaaaatcatgcaccccaaagtttgc
cccatatgctcacatgagcttttatgcgaagagatttttacttattgtcaaaaccttaat
tgcccggcaaggttgaaagaaagcttgattcattttgcttctaaggacgctttaaacatt
caaggcttgggcgataaagtcatagagcaactttttgaagaaaaactcattttcaacgcc
ctagacttgtatgctttaaagttagaagatttaatgcggctagacaaattcaaaatcaaa
aaagctcaaaatctattagacgctattcaaaagagcaaaaaccctcccttatggcgtttg
atcaacgctttagggattgagcatattggtaaaggagcgagtaaaacgctagccaaatac
ggcttacatgtgttagaaaaaagcgaagctgagtttttagaaatggaaggctttggggtg
gaaatggcgcattctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttattaaaccctaaaagtagcgatacgactgaagaaaagcaaaaaagctcttct
gttttcagtgataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaattgcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctggcacaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaaacgccttaaggaattggattaa
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integrated database retrieval system
