Helicobacter pylori 26695: HP_0615
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Entry
HP_0615 CDS
T00008
Name
(GenBank) DNA ligase (lig)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpy
Helicobacter pylori 26695
Pathway
hpy03030
DNA replication
hpy03410
Base excision repair
hpy03420
Nucleotide excision repair
hpy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HP_0615
03410 Base excision repair
HP_0615
03420 Nucleotide excision repair
HP_0615
03430 Mismatch repair
HP_0615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpy03032
]
HP_0615
03400 DNA repair and recombination proteins [BR:
hpy03400
]
HP_0615
Enzymes [BR:
hpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HP_0615
DNA replication proteins [BR:
hpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HP_0615
DNA repair and recombination proteins [BR:
hpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HP_0615
NER (nucleotide excision repair)
GGR (global genome repair) factors
HP_0615
MMR (mismatch excision repair)
DNA ligase
HP_0615
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HP_0615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
Nlig-Ia
HHH_2
PTCB-BRCT
HHH_5
RNA_ligase
BRCT_2
RabGAP-TBC
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AAD07680
UniProt:
O25336
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(659069..661039)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIAYLNTLSHHYYNLDEPIVSDAIYDELYQELKAYEEKNPNGIQANSPTQ
KVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYNGEIEIRGEVIISKKDFDALNQ
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSAIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIEKKN
IMLSDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFELLNPKNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIAGENPGSKLALAQKHGVSVLNEEELLKRLKELD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgcatatttaaacaccctatcgcac
cattattacaaccttgatgaacccatcgtaagcgatgcgatctatgatgaactttaccaa
gaattgaaagcttatgaagaaaaaaaccctaatggcattcaagctaattcccctacccaa
aaagtgggggctactaccaccaattcgttcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaagcgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagtgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagctagtgaaggcgaccactaggggcaacggcttagaaggagaa
ttagttagcgcaaacgctaaacacatcgctaatatcccccacgctatcgcttataatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttgaatcaa
gagcgcttaaacgctaatgaacccctattcgctaaccccagaaacgccgcatcagggagt
ttgaggcaacttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaattttttaagctttaaggagtgtttggattttatcgtctcg
ttaggttttagcgccattcaatacttaagcctaaacaaaaaccaccaagaaatagaagac
aattaccacaccctaattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattaaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctttagaaaaacacaccaaaattgtaggagtcatt
aaccaagtggggcgcagcggggcgatcacaccggtcgctcttttagagcctgtggaaatt
gctggagctatgattaatagagcgaccttacacaattattctgaaattgaaaaaaagaat
atcatgctcagtgatagggtcgttgtcattagaagcggcgatgtgatccctaaaatcatc
aagcctttagaatcttatagagacggctcgcaacataaaattgaacgccccaaggtttgc
cctatatgttcgcatgagcttttgtgcgaagagatttttacttattgtcaaaaccttaat
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcttgggcgataaagtcatagagcaactttttgaagaaaagctcatttttaacgct
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaatttaaaattaaa
aaagctcaaaatctattagacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatattggtaagggagcgagtaaaacgctggccaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaagaatttatccgatcgtta
tttgagttattaaaccctaaaaatagcgatatggctgaagaaaagcaaaaaagctcttct
gttttcaataataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttaggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgctggagaaaaccccggctcaaaactcgctctggcacaaaaacatggcgtg
agcgttttgaatgaagaagaattattaaagcgccttaaagaattggattaa
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