Helicobacter pylori oki828: HPOKI828_03130
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Entry
HPOKI828_03130 CDS
T03728
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpyh
Helicobacter pylori oki828
Pathway
hpyh03030
DNA replication
hpyh03410
Base excision repair
hpyh03420
Nucleotide excision repair
hpyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPOKI828_03130
03410 Base excision repair
HPOKI828_03130
03420 Nucleotide excision repair
HPOKI828_03130
03430 Mismatch repair
HPOKI828_03130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyh03032
]
HPOKI828_03130
03400 DNA repair and recombination proteins [BR:
hpyh03400
]
HPOKI828_03130
Enzymes [BR:
hpyh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPOKI828_03130
DNA replication proteins [BR:
hpyh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPOKI828_03130
DNA repair and recombination proteins [BR:
hpyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPOKI828_03130
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI828_03130
MMR (mismatch excision repair)
DNA ligase
HPOKI828_03130
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPOKI828_03130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
RabGAP-TBC
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AHN43285
LinkDB
All DBs
Position
complement(618937..620907)
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDDPIVSDAVYDELYQELKAYEEKNPNSIQANSPTQ
KVGAIAPNSFNKNPHLMRMWSLDDVFNQNELQAWLQRILKAYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVSANAKHIANIPHAIAYDGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFSTIQYLSLNKNHQEIEENYHTLIKEREGFFALLDGMVIVVNELNIQKELGYTQKSPK
FACAYKFPALEKHTKIVGVINQVGRSGAITPVAVLEPVEIAGAIITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIK
KAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMARSLVNFYASNQEFIRSLFDLLNPKNSDMTKEKQKSSSVFNNKTIVLTGTLSKPRQEY
AQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKEFD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgatcccatcgtaagcgatgcggtctatgatgaactttatcaa
gaattaaaagcttatgaagaaaaaaaccctaatagcattcaagctaattcccctacccaa
aaagtgggggctattgcccccaattcattcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaatgaattgcaagcgtggttgcaacgcattttaaaa
gcctatcctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcactcaatctt
ttgtatcaacatggcaagctagtgaaagcgaccactaggggcaacggcttagagggagaa
ttagtgagcgcaaacgctaaacacatcgctaatatcccccatgctatcgcttatgatgga
gaaatagaaatcaggggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattcgccaaccctagaaatgccgcatcagggagt
ttgaggcagcttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaatttcctaagctttaaggagtgtttggattttattgtttcg
ctgggttttagcacgattcaatacttaagcctgaacaaaaaccaccaagaaatagaagaa
aattaccacaccctgattaaagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattgaatattcaaaaggagctaggctacacgcaaaaatcccctaaa
ttcgcttgtgcttataaattcccggctctggaaaaacacacaaaaattgtaggagtcatt
aaccaagtggggcgcagcggcgcgatcacaccggtcgctgttttagagcctgtagaaatt
gctggagctatcattacgaaagccactttacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgtcgtcattagaagcggcgatgtgatccctaaaatcatc
aaacctttagaatcttatagggacggctcgcaacataaaattgaacgccccaaagtttgc
cctatatgttcgcatgagcttttatgcgaagagatttttacttattgtcaaaacctcaac
tgcccagcaaggttgaaagaaagcttgattcatttcgcttctaaagacgctttaaacatt
caaggcctaggcgataaagtcatagagcaactttttgaagaaaaactcatttttaacgcc
ctggatttgtatgctttaaaattagaagatttaatgcggctagacaaattcaaaatcaaa
aaagctcaaaatctattggacgctattttaaaaagcaaaaaccctcccttatggcgtttg
attaacgctttagggattgagcatatcggcaagggagcgagtaaaacgctggctaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcgctctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttgttgaaccccaaaaatagcgatatgaccaaagaaaagcaaaaaagctcttct
gttttcaataataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaatgttagaaaatttgggggcaaaaatttcttcaagcgtgagcgctaaaaccgat
tttttaatcgttggagaaaacgccggctcaaaactcgctctagcacaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaaacgccttaaagaatttgattaa
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