Helicobacter pylori oki898: HPOKI898_03940
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Entry
HPOKI898_03940 CDS
T03729
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hpyj
Helicobacter pylori oki898
Pathway
hpyj03030
DNA replication
hpyj03410
Base excision repair
hpyj03420
Nucleotide excision repair
hpyj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPOKI898_03940
03410 Base excision repair
HPOKI898_03940
03420 Nucleotide excision repair
HPOKI898_03940
03430 Mismatch repair
HPOKI898_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyj03032
]
HPOKI898_03940
03400 DNA repair and recombination proteins [BR:
hpyj03400
]
HPOKI898_03940
Enzymes [BR:
hpyj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPOKI898_03940
DNA replication proteins [BR:
hpyj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPOKI898_03940
DNA repair and recombination proteins [BR:
hpyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPOKI898_03940
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI898_03940
MMR (mismatch excision repair)
DNA ligase
HPOKI898_03940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPOKI898_03940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AHN44894
LinkDB
All DBs
Position
794124..796094
Genome browser
AA seq
656 aa
AA seq
DB search
MIKSQKEYLERIEYLNTLSHHYYNLDESIVSDAIYDELYQELKAYEEKNPNDIQANSPTQ
KVGATTTNPFNKNPHLMRMWSLDDVFNQNELQAWLQRILKTYPSASFVCSPKLDGVSLNL
LYQHGKLVKATTRGNGLEGELVTHNAKHIANIPHSIAYNGEIEIRGEVIISKKDFDALNK
ERLNANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVS
LGFNSIQYLSLNKNHQEIEDNYHTLIREREGFFALLDGMVIVVNELDIQKELGYTQKSPK
FACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMITKATLHNYSEIEKKN
IMLNDRVVVIRSGDVIPKIIKPLETYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLN
CPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIVNALDLYALKLEDLMRLEKFKIK
KAQNLLDAIQKSKNSPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGV
EMAHSLVNFYASNQEFIRSLFDLLNPKNSDMAEEKQKSSSVFNNKTIVLTGTLSKPRQEY
AQTLENLGAKIASSVSAKTDFLIAGENPGSKLALAKKHGVSVLNEEELLKRLKELD
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagccaaaaagaatatttagaaagaattgaatatttaaacaccctatcgcac
cattattacaaccttgatgagtcaatcgtaagcgatgcgatctatgatgaactttaccaa
gaattaaaagcttatgaagaaaaaaaccctaatgacattcaagctaattcccctacccaa
aaagtgggggctactaccaccaatccgttcaataaaaacccccatttaatgcggatgtgg
agcttagatgatgtgttcaatcaaaacgaattgcaggcgtggttgcaacgcattttaaaa
acctaccctagcgcttcgttcgtgtgttcgcccaaacttgatggggtttcgctcaatctt
ttgtatcaacatggcaagttagtgaaggcgaccactaggggtaatggcttagaaggagag
cttgttacccacaacgctaaacacatcgctaatatcccccattctatcgcttataatgga
gaaatagaaatcagaggcgaagtgatcatttctaaaaaggattttgacgctttaaacaaa
gagcgcttaaacgctaatgaacccctattcgctaaccctagaaatgccgcatcagggagt
ttgaggcaacttgatagcgaaatcactaaaaagcgtaaattgcaattcattccttggggc
gtgggcaagcattctttaaattttttaagctttaaggagtgtttggattttatcgtctcg
ctgggttttaattctattcaatacttaagcctaaacaaaaaccaccaagaaatagaagac
aattaccacaccctgattagagaaagggagggcttttttgcccttttagacggcatggtg
atcgttgtgaatgaattggatattcaaaaagagctaggctacacgcaaaaatcccctaaa
ttcgcttgcgcttataaattcccggctttagaaaaacacaccaaaatcataggagtcatt
aaccaagtggggcgcagcggggcgatcacaccggtcgctcttttagagcctgtagaaatt
gctggagccatgattactaaagcgaccttacacaattattctgaaattgaaaaaaagaat
atcatgctcaatgatagggttgtcgtcattagaagtggcgatgtgatccctaaaatcatc
aaacctttagaaacttatagagacggctcacaacacaaaattgaacgccccaaagtttgc
cctatatgctcgcatgagcttttatgcgaagagatttttacttattgtcaaaaccttaat
tgcccggcaaggttgaaagaaagcttgattcatttcgcttctaaggacgctttaaacatt
caaggcttaggcgataaagtcatagagcaactttttgaagaaaaactcattgttaacgct
ttggatttgtatgctttaaaattagaagatttaatgcggctagaaaaattcaaaatcaaa
aaagctcaaaatctattagacgctattcaaaagagcaaaaactctcccttatggcgtttg
attaacgctttagggattgagcatattggtaagggagcgagtaaaacgctggccaaatac
ggcttaaatgtgttagaaaaaagcgaagccgagtttttagaaatggaaggctttggggtg
gaaatggcgcactctttagtcaatttttatgcgagcaatcaggaatttatccgatcgtta
tttgatttgttaaaccctaaaaacagcgatatggctgaagaaaagcaaaaaagctcttct
gttttcaataataaaacgattgttttaaccggcacgctttctaaaccacggcaagaatac
gctcaaacattagaaaatttaggggcaaaaattgcttcaagcgtgagcgctaaaaccgat
tttttaatcgctggagaaaaccccggctcaaaactcgctctagcaaaaaaacatggcgtg
agcgttttgaatgaagaagaattgttaaagcgccttaaagaattggattaa
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