Halomonas qaidamensis: K1Y77_03655
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Entry
K1Y77_03655 CDS
T08648
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hqd
Halomonas qaidamensis
Pathway
hqd03030
DNA replication
hqd03410
Base excision repair
hqd03420
Nucleotide excision repair
hqd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hqd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1Y77_03655 (ligA)
03410 Base excision repair
K1Y77_03655 (ligA)
03420 Nucleotide excision repair
K1Y77_03655 (ligA)
03430 Mismatch repair
K1Y77_03655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hqd03032
]
K1Y77_03655 (ligA)
03400 DNA repair and recombination proteins [BR:
hqd03400
]
K1Y77_03655 (ligA)
Enzymes [BR:
hqd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K1Y77_03655 (ligA)
DNA replication proteins [BR:
hqd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K1Y77_03655 (ligA)
DNA repair and recombination proteins [BR:
hqd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K1Y77_03655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1Y77_03655 (ligA)
MMR (mismatch excision repair)
DNA ligase
K1Y77_03655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K1Y77_03655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UYV19782
UniProt:
A0ABY6JS44
LinkDB
All DBs
Position
780160..782223
Genome browser
AA seq
687 aa
AA seq
DB search
MSQPETILLEEISQLRADLDDANYRYYVLDEPKLTDADYDRKLQRLKQLESEYPEVVSPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSRDDITAFAERVAERLECEAGEIEFSCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGDSIPALLEVRGEVI
MRHAGFEALNDRAREEGSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQVARIDMMHL
GDGALSNDAMTTHSQQMEKLKAWGFRASAELRTVNGPELVADYCERLGEKRDQLGYDIDG
VVIKVNDLRQQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLAPV
TVAGVTVSNATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDIEKRPAEAREIIFPD
HCPVCGSDIERLAGEAVARCSGGLYCAAQRKEALKHFASRKALDVDGLGEKLIEQLVDLD
WVKTPADLFHLSAEQLQELPRMGEKSSANLVNALDKAKHTTLARFIYALGIREVGEATAA
NLASHFGTLQTLQEADQTALEAVNDVGPIVAAHVHTFFRQPHNLETLKALLDAGITWQES
EVTQGPTPLAGQTWVLTGTMDSMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKL
TKAEQLGVEVIDEATFIERLAAWEQSE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctgaaaccatactgctagaagagattagtcagctgcgcgctgacctggat
gatgcaaactaccgctactacgtgttggacgagccaaagctgaccgatgcagattatgac
cgcaagctgcagcggttgaagcagctggaatctgaataccctgaggtagtgtcacctgat
tcccctactcagcgggtaggggccgcgccagcagaagggtttcctgaagttgctcatgcg
attccgatgctgtcgttagataacgcttttagccgtgacgacattacggcgtttgccgag
cgtgttgctgaacgcttggagtgtgaggctggggagattgaatttagctgtgagccgaag
ctcgacggtgctgcagtctcgctagtgtacgagcagggcgtactggttagtggcgcgacc
cgtggcgatggccgtacgggggaaggtattacatcgaatttgcgaaccttacggtctgtt
ccgttaaagctaatgggtgacagcattccagcgctgttagaagtacgtggcgaagtcatt
atgcgccacgcgggttttgaagcgctcaatgatcgagccagggaagaaggcagcaaagta
ttcgctaacccgcgtaatgcggcggctggcagcctacgtcagcttgatccgcgaattacc
gcaactcgcccattagagtttcatgcttatcaagttgcccgcatcgatatgatgcatttg
ggtgacggcgcgcttagcaatgacgcaatgacaacccatagccagcaaatggaaaagctc
aaagcgtggggctttcgcgcaagcgccgaacttcggactgtcaatggccctgagttggta
gccgattactgcgagcggctgggtgaaaagcgcgaccagttgggttacgacattgatggc
gtcgtgattaaagtaaacgacctacgccagcagcgagaacttggctttgtcgcgcgcgcg
ccacgctgggcggtagcgtttaagtttcctgcccaggaagaagtcacaacgctaaacgat
gtggaatttcaggtaggccgtaccggtgcaattaccccggttgctaggctagcgccggtc
actgttgccggtgtgacggtatcgaacgctacgctgcataatgctgatgagatcactcgc
ttaggtgtgatgattggcgatacggtggccatccggcgtgcaggtgacgtgattccgcag
gtggtgcgggtagatatcgaaaagcgtccggccgaggcgcgagaaattatttttcccgac
cactgtccggtgtgcggttcagatattgaacggctggcaggtgaggcggtcgctcgctgc
tcgggtgggctttattgtgccgcacagcgcaaagaggccctgaagcatttcgccagtcgt
aaagcgttagatgtggatggattgggtgaaaagctgattgaacagctggtggacctggac
tgggtgaaaacaccggcggacttatttcacctatccgctgagcagcttcaggagttgcca
cgcatgggtgaaaagtcctcggccaacttagtaaatgccttggataaggccaagcacacc
acgctggcacgcttcatttacgccttgggtattcgggaagtaggcgaagccacagcggca
aacttagccagccactttggtactctgcagaccctgcaagaagctgatcaaacagcgctg
gaagcggttaatgatgttggcccgattgtcgccgctcatgttcacaccttttttcgtcag
ccccataacctagaaacgctgaaagccttacttgatgcaggtatcacttggcaggagagt
gaagtaacgcaaggcccaacgcccttagcaggtcaaacctgggtgctcactggtacgatg
gacagtatgacccgcgatgaaggaaaagcgcggttacaagcactaggcgctaaagtggca
ggcagtgtttccaagaaaaccacctgtcttgtggcaggcgaggccgcaggcagtaagtta
accaaagcagagcaactgggcgttgaagtgatcgatgaagccacctttatcgagcgtcta
gctgcctgggagcagagtgaatga
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