Hymenobacter qilianensis: H9L05_18345
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Entry
H9L05_18345 CDS
T06772
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hqi
Hymenobacter qilianensis
Pathway
hqi03030
DNA replication
hqi03410
Base excision repair
hqi03420
Nucleotide excision repair
hqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L05_18345 (ligA)
03410 Base excision repair
H9L05_18345 (ligA)
03420 Nucleotide excision repair
H9L05_18345 (ligA)
03430 Mismatch repair
H9L05_18345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hqi03032
]
H9L05_18345 (ligA)
03400 DNA repair and recombination proteins [BR:
hqi03400
]
H9L05_18345 (ligA)
Enzymes [BR:
hqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L05_18345 (ligA)
DNA replication proteins [BR:
hqi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L05_18345 (ligA)
DNA repair and recombination proteins [BR:
hqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L05_18345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L05_18345 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L05_18345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L05_18345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QNP51873
UniProt:
A0A7H0GUA7
LinkDB
All DBs
Position
4055632..4057797
Genome browser
AA seq
721 aa
AA seq
DB search
MTAIQDQIKDLTERLHHLNYQYYQKDISEVPDPEFDRLLAELQRLEQQHPEFALPNSPTQ
RVGGTITKQFPTALHRYPMLSLGNTYSEADLREFDERVRRGLGGDEFDYVCELKFDGVAM
SLTYTDGQLTQGVTRGDGTRGDVVTNNVRTIKNLPLHLRPAANQPAEFEARGEVFMPLNV
FEELNKEREQNGEALLANPRNACSGALKLQDSALVAARRLRFFSYGFLSPNRGAFPTHSA
SLEALQSWGLPVSDSWRRCHSIHEVLDFIHEWEKKRFTLPVATDGIVIKVDNFRQQEVLG
YTAKSPRWAIAYKYPAEAARTRLREVQYNVGRTGAVTPVAHLDPVPLAGTVVKRASVHNA
NQIAALDLRLGDMVFVEKGGEIIPKITGVDLTARPTDSQPISFPATCPACNTPLIRPAGE
AHYRCPNERGCPPQLKARLEHYVSRKALNIDGLGAETVGRFFDLGLVITPADIYDLPQRR
DELVNLERLGEKSIQNLLAGIEASKQVPFDRVLFGLGIRYVGETVADKLATHYRNIDALA
AASASELAAVPEVGGVIAESAAAWFQDDFNRQIVTRLHAAGVQMALTGEAPKAVSDRLAG
STFVLSGVFEDHSRDELQQLIEQHGGKVTGSISKKLSYLVAGDKMGPAKREKAIELKVPI
INENDLIAMLPTPETIAEPDIFVSLPVTPPDNEPVEPPTYPAPATPSPATGGGAGQQGSL
F
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgactgccatacaagaccagataaaggacctcactgagcgcctccaccacctcaattac
cagtattatcagaaggatatttctgaagttccggacccggaattcgaccgtctgctggcc
gaattgcagcgcctggagcagcagcacccggagttcgcgctacccaactcgcctactcag
cgtgttggcggcaccattaccaagcagtttccaacggccctgcaccgctaccctatgctc
tcgctcggcaacacctactcggaggccgacctgcgcgagttcgatgagcgggtgcgccgc
ggcttgggcggcgacgagttcgactacgtctgcgagctgaagttcgacggtgtggccatg
agcctgacttataccgatggccagcttacccagggcgtaacgcgtggcgacggcacccgt
ggcgacgtggtcaccaacaatgtgcgtaccatcaaaaatctgccgctccacctacgtccc
gccgctaatcagccggccgagtttgaagcccgtggggaagtatttatgcccctgaatgta
tttgaggagctaaataaggagcgtgagcaaaatggggaagcactactagccaacccgcgc
aacgcctgtagcggcgccctcaaactgcaagattcggccttggtagcggcccgtcgcctg
cgttttttttcctacggatttctcagtccgaaccggggggcttttccgacacacagcgct
tcgctcgaagccttgcaaagctggggcttgcccgtgtcggatagctggcggcggtgtcat
tctattcatgaagtgctcgacttcatacatgagtgggagaaaaagcgctttaccctaccc
gttgctaccgatggcattgtaatcaaggtcgataattttcggcagcaggaagtgctgggc
tacacggccaagagcccacgttgggccattgcgtataaataccctgctgaggccgcccgt
acccgtctgcgggaagtgcagtacaacgtaggccgcaccggcgccgtgacgcccgtagcc
catctagaccccgttccgctggccggcactgtagttaaacgcgcctccgtgcacaatgcc
aatcagattgccgccctcgacttacgcctcggcgacatggtattcgtggaaaaaggcggt
gaaatcatacccaaaataaccggggtagacctcaccgcccgccccactgacagccagcct
atcagctttccggccacttgtccggcctgcaacacgccccttatccgccccgccggtgag
gcccattatcgttgtccgaatgagcgcggctgcccgccgcagctaaaggcccgcctggag
cactatgtatcgcgcaaagccctgaatatcgacggcctaggagccgaaaccgtgggccgc
tttttcgacttgggtcttgtcattactcccgccgacatatacgacttgccgcagcgccgc
gatgagttggtgaacctggagcgcttgggcgaaaagtctatccagaacttgctggctggt
attgaagccagcaagcaggttccctttgatcgggtgctatttgggctgggcattcgctac
gtgggcgaaactgtggccgataaactagccactcattaccgaaacattgatgctctggca
gccgcatcggcctccgagctggcggccgtaccggaagttggcggcgtgattgcggagtcg
gcagcagcgtggtttcaggatgattttaatcgccaaatcgttacccgcctgcatgccgca
ggtgttcagatggccctgactggtgaagcacctaaggccgttagcgaccgccttgcgggc
tcgaccttcgtgctatccggagttttcgaagaccatagtcgtgatgagttgcagcagcta
atagaacagcatggtggcaaagtgacggggtcaatcagcaaaaagctcagctacctagtg
gccggcgacaaaatgggcccggccaagcgcgaaaaggcaatagagttaaaagtaccaatc
atcaatgaaaacgatttaatagccatgttaccgactccggaaacgattgcggagccagac
atttttgtatctttgcccgtaaccccgccggacaatgagccggtggagccgccgacttat
cccgcccctgctacgccttcaccggcgacgggcggcggagcaggtcaacagggttcgttg
ttttag
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