Halomonas qinghailakensis: M0220_03995
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Entry
M0220_03995 CDS
T10463
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03030
DNA replication
hqn03410
Base excision repair
hqn03420
Nucleotide excision repair
hqn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hqn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M0220_03995 (ligA)
03410 Base excision repair
M0220_03995 (ligA)
03420 Nucleotide excision repair
M0220_03995 (ligA)
03430 Mismatch repair
M0220_03995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hqn03032
]
M0220_03995 (ligA)
03400 DNA repair and recombination proteins [BR:
hqn03400
]
M0220_03995 (ligA)
Enzymes [BR:
hqn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M0220_03995 (ligA)
DNA replication proteins [BR:
hqn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M0220_03995 (ligA)
DNA repair and recombination proteins [BR:
hqn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M0220_03995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M0220_03995 (ligA)
MMR (mismatch excision repair)
DNA ligase
M0220_03995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M0220_03995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UYO75329
UniProt:
A0AA46TSG0
LinkDB
All DBs
Position
complement(855541..857604)
Genome browser
AA seq
687 aa
AA seq
DB search
MSQPETILLEEISQLRADLDDANYRYYVLDEPKLTDADYDRKLQRLKQLESEYPEVVSPD
SPTQRVGAAPAEGFPEVAHAIPMLSLDNAFSRDDITAFAERVAERLECEAGEIEFSCEPK
LDGAAVSLVYEQGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGDSIPALLEVRGEVI
MRHAGFEALNDRAREEGSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQVARIDMMHL
GDGALSNDAMTTHSQQMEKLKAWGFRASAELRTVNGPELVADYCERLGEKRDQLGYDIDG
VVIKVNDLRQQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLAPV
TVAGVTVSNATLHNADEITRLGVMIGDTVAIRRAGDVIPQVVRVDIEKRPAEAREIIFPD
HCPVCGSDIERLAGEAVARCSGGLYCAAQRKEALKHFASRKALDVDGLGEKLIEQLVDLD
WVKTPADLFHLSAEQLQELPRMGEKSSANLVNALDKAKHTTLARFIYALGIREVGEATAA
NLASHFGTLQTLQEADQTALEAVNDVGPIVAAHVHTFFRQPHNLETLKALLDAGITWQES
EVTQGPTPLAGQTWVLTGTMDSMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKL
TKAEQLGVEVIDEATFIERLAAWEQSE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctgaaaccatactgctagaagagattagtcagctgcgcgctgacctggat
gatgcaaactaccgctactacgtgttggacgagccaaagctgaccgatgcagactatgac
cgcaagctgcagcggttgaagcagctggaatctgaataccctgaggtagtgtcacctgat
tcccctactcagcgggtaggggccgcgccagcagaagggtttcctgaagttgctcatgcg
attccgatgctgtcgttagataacgcttttagccgtgacgacattacggcgtttgccgag
cgtgttgctgaacgcttggagtgtgaggctggggagattgaatttagctgtgagccgaag
ctcgacggtgctgcagtctcgctagtgtacgagcagggcgtactggttagtggcgcgacc
cgtggcgatggccgtacgggggaaggtattacatcgaatttgcgaaccttacggtctgtt
ccgttaaagctaatgggtgacagcattccagcgctgttagaagtacgtggcgaagtcatt
atgcgccacgcgggttttgaagcgctcaatgatcgagccagggaagaaggcagcaaagta
ttcgctaacccgcgtaatgcggcggctggcagcctacgtcagcttgatccgcgaattacc
gcaactcgcccattagagtttcatgcttatcaagttgcccgcatcgatatgatgcatttg
ggtgacggcgcgcttagcaatgacgcaatgacaacccatagccagcaaatggaaaagctc
aaagcgtggggctttcgcgcaagcgccgaacttcggactgtcaatggccctgagttggta
gccgattactgcgagcggctgggtgaaaagcgcgaccagttgggttacgacattgatggc
gtcgtgattaaagtaaacgacctacgccagcagcgagaacttggctttgtcgcgcgcgcg
ccacgctgggcggtagcgtttaagtttcctgcccaggaagaagtcacaacgctaaacgat
gtggaatttcaggtaggccgtaccggtgcaattaccccggttgctaggctagcgccggtc
actgttgccggtgtgacggtatcgaacgctacgctgcataatgccgatgagatcactcgc
ttaggtgtgatgattggcgatacggtggccatccggcgtgcaggtgacgtgattccgcag
gtggtgcgggtagatatcgaaaagcgtccggccgaggcgcgagaaattatttttcccgac
cactgtccggtgtgcggttcagatattgaacggctggcaggtgaggcggtcgctcgctgc
tcgggtgggctttattgtgccgcacagcgcaaagaggccctgaagcatttcgccagtcgt
aaagcgttagatgtggatggattgggtgaaaagctgattgaacagctggtggacctggac
tgggtgaaaacaccggcggacttatttcacctatccgctgagcagcttcaggagttgcca
cgcatgggtgaaaagtcctcggccaacttagtaaatgccttggataaggccaagcacacc
acgctggcacgcttcatttacgccttgggtattcgggaagtaggcgaagccacagcggca
aacttagccagccactttggtactctgcagaccctgcaagaagctgatcaaacagcgctg
gaagcggttaatgatgttggcccgattgtcgccgctcatgttcacaccttttttcgtcag
ccccataacctagaaacgctgaaagccttacttgatgcaggtatcacttggcaggagagt
gaagtaacgcaaggcccaacgcccttagcaggtcaaacctgggtgctcactggtacgatg
gacagtatgacccgcgatgaaggaaaagcgcggttacaagcactaggcgctaaagtggca
ggcagtgtttccaagaaaaccacctgtcttgtggcaggcgaggccgcaggcagtaagtta
accaaagcagagcaactgggcgttgaagtgatcgatgaagccacctttatcgagcgtcta
gctgcctgggagcagagtgaatga
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