Herbaspirillum rubrisubalbicans: Hrubri_1509
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Entry
Hrubri_1509 CDS
T04238
Symbol
nth
Name
(GenBank) endonuclease III protein
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hrubri_1509 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_1509 (nth)
Enzymes [BR:
hrb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Hrubri_1509 (nth)
DNA repair and recombination proteins [BR:
hrb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Hrubri_1509 (nth)
Prokaryotic type
Hrubri_1509 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ALU88718
LinkDB
All DBs
Position
complement(1764855..1765505)
Genome browser
AA seq
216 aa
AA seq
DB search
MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT
PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGEVPESREALEALPGVGRK
TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI
LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPAKGV
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgaccaaacgccgcgaaatcttcgagcgcctgcgccaggccaaccccaccccg
accaccgagctggaatacaccacgcccttcgagctgctgatcgccgtgctgctgtcagcg
caggctaccgatgtgtcggtgaacaaggccacccgcaagctctatccggtggccaatacg
cccgaggccatctaccgcatgggggtggaccagctcatgccttacatccagaccatcggc
ctgtatcgcaccaaggccaagaacgtcatcgagacctgccgcatcctcatcgaagaacac
ggcggcgaggtaccggagtcgcgcgaggcgctggaagccttgccgggcgtgggccgcaag
accgccaacgtggtattgaataccgccttcggccatcccaccattgcggtggatacccac
atcttccgcgtctccaaccgcaccggactggcaccaggcaaggacgtcgatgaagtcgag
cgcaagctcatcaagttcgtcgcccccgagttccgccaggatgcgcaccactggctgatc
ctgcatggtcgctatacctgcattgcacgcaagccacagtgctggaactgcatcattgcc
gacctgtgcgaattcaagcagaagacgccgctgccagccaagggcgtctaa
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