Haliotis rubra (blacklip abalone): 124253608
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Entry
124253608 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hrj04054
]
124253608
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124253608
Pattern recognition receptors [BR:
hrj04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
124253608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
DEAD
ResIII
RIG-I_C
Helicase_C
CARD_2
PhoH
AAA_19
CARD
SWI2_SNF2
AAA_22
AAA_34
DUF87
nSTAND3
AAA_16
Yippee-Mis18
P-loop_TraG
AAA_30
Mg_chelatase
Hemagglutinin
Motif
Other DBs
NCBI-GeneID:
124253608
NCBI-ProteinID:
XP_046543369
LinkDB
All DBs
Position
Unknown
AA seq
1068 aa
AA seq
DB search
MADSPVDVSPEDHFKYMIEVYEPFLVQHLDCVELLPYMSFLRESAARIRKLKRSGKPVQS
AELFFASLKESDEEGRYAAFRDALNEADQEIVKTVLEGGSIDDYHDENRKLIELFSKPIS
ERLDPITMMQLLRGKDILTERDESEIKHVTSRFEAVLMLLHCVFRRKIGWYNTFMAVMYE
LNPDLVEMVDPEFVEKHKAHQRTSEKQIESDDDMVMGIEEPPMEVTGDGCYSMDNMAAND
PGSGDSMMADNCGEKILSQAGLKEEELHTQRKLFPGNSSNSLPQNIPGDLQNNLSDEQQG
MKSAKSMTEFKDIPTDETSVQSEHTSVKLMETSDADLSDGAGDTSNIEHMFTPPTTAEPS
TPATPLLLRPYQEELAEAALKRHNTIICAPTGSGKTFVAAKIMREHLKKGGVRKIIFFAN
QVALVDQQFKVIKEHLPRDLRIQRLSSDTQEALRVPLRELVKRNDILFMTPQILVDALRM
KVTGISSLCEFTMLVFDECHHTNSRHPFNRIMFSYMDLKLDESIEDDRRQLPQIVGLTAS
VGVGKARSIPGAVEHIQKLCSNLDALGGVSTVRQHEEDLAKHARTVGVDVVKTDKRREDK
FRNVIASNLMEVIEKMIVQQDKVSLVQDRPRLLASLKQPVERGGEKYTIWVSTLKREVAN
IDDQSVRRFFFSCRRMLELYNKALAINEDCRTLDALSYLEKEIEALYSSSVVMDVTDHKL
KELFEKLKPVLLDAAQSPDCVNPKLTSLCVMIMKAFETQQDSRCMVFVKTRDLAMALKRW
MEDDQHLSYLKPGMFTGQNASADKGGMTRNEQVDAAELFRKGNHKIIVATSVAEEGMDFS
KCNLVIRYEYVTNEIALVQARGRARAEDSKFVLFTSNQQGAAEKEELNLIREMMMNEALV
RLQATIAENPRRFRSEILQLQKEAKSARDHEAINRKGRYLSDDEFEIRCQKCNQLACFST
DIRTIKETNHIVNDPDFGTKVNVKPHPKPGNMGLDMKKHSKIFCKKCGLDWGIGVIYKNA
DFPVIKIESFVAIDTMGRRDSPRKWKNAPFEVPEISHDEMTNYKPFIA
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagtccggtagatgtgtctccggaagatcatttcaagtacatgatcgaggtc
tacgagccgttccttgtgcagcatcttgactgtgttgagttgcttccgtatatgtctttt
ctgagagaatctgcagcacgtattcggaagctgaagagaagtggtaagccagtccagtca
gcagaattgttttttgcaagtcttaaagagtcagatgaagaaggtcgatacgcagccttc
agggatgcattgaatgaggctgatcaagaaattgttaaaacagttcttgaaggtggcagc
attgatgattatcatgatgaaaataggaaactcattgaactattctctaagcctatttct
gagagactggatccaattacaatgatgcaacttctcagagggaaggatatactgacagaa
agagatgaaagtgaaataaaacatgtaacttctcgatttgaggcagtgctgatgttattg
cactgtgtattccgacggaagataggttggtataatacatttatggctgtgatgtatgaa
ctgaacccagaccttgtggaaatggtggatcctgaatttgtagaaaagcacaaggcacat
cagcgcacctcggagaaacagatagagtccgatgatgacatggtgatgggaatagaggaa
cctcccatggaagttacgggagatggctgctattcaatggacaacatggctgccaatgat
ccaggcagtggtgactccatgatggctgacaactgtggagagaagatactgtcccaggca
gggctcaaagaagaggaattacatactcaaaggaaactgtttcctggtaattcatctaac
tcccttccacaaaacatccctggagacttgcagaataacttgagcgatgaacagcagggt
atgaaatctgccaagtctatgacagagttcaaggacattccaactgatgagacgtccgtt
caaagtgagcacacaagtgtaaagcttatggagaccagtgatgcagacctatcagatggg
gcaggcgataccagcaacatagaacacatgttcactccccccaccacagcggagcccagt
acccctgccacaccactcttgctccgcccctaccaggaggaactagctgaagctgccctg
aaacggcataacaccatcatctgtgctccaactggatcggggaagacgtttgtggcagca
aaaataatgcgggagcatcttaagaaaggaggggtgaggaagatcatcttctttgccaac
caggtggctctggtggatcagcagttcaaggtgataaaggagcacctgccccgtgatctc
cgcatccagcgactgagcagcgacacacaggaggctctcagggttcctctccgtgaactt
gtaaaacggaacgacatcctgttcatgaccccccaaatcctggtggacgccctgagaatg
aaggtcactggcatctccagcctgtgtgagttcaccatgttggtgtttgatgagtgccat
cacaccaactccagacatcccttcaacagaataatgttcagctatatggatctcaaactg
gatgagtccattgaggatgacaggaggcagctgcctcagatcgtgggcctgacagcatct
gtgggtgtagggaaggccaggagtatcccaggagcagtggagcacattcagaaactctgc
tccaatctggacgcccttggcggagtatcaacagtcaggcagcatgaagaggaccttgct
aaacatgcgcggacagttggagtcgatgtggtgaagaccgacaagcggagagaggacaag
tttagaaatgtgatagcttccaacctgatggaggtcatcgagaaaatgattgtccagcaa
gacaaggtcagtctggtgcaagaccgaccccgactgttagcgtccctgaagcagccagtg
gagcggggtggggaaaagtacaccatctgggtgagcacccttaagagggaggtggccaac
attgacgatcagagtgtccgcagattcttcttttcatgtcggagaatgttggagttgtac
aacaaagcattggccatcaacgaggattgccggacactggatgcactcagttatctggag
aaagagatagaggctctctactcatccagtgtggtgatggatgtcactgaccacaagctt
aaagagctctttgaaaaactaaagcctgttctccttgacgctgctcagagtcctgactgt
gtcaacccaaagctgacgtcactatgtgtgatgatcatgaaggcatttgaaacccagcag
gattctcgctgtatggtgtttgtgaagacacgagacttggcgatggccctgaagcgctgg
atggaggatgaccaacatctctcctacctcaagccaggcatgttcactggacagaatgct
tctgctgacaaaggaggtatgaccaggaatgagcaggtggatgctgcagagctgttcagg
aaaggaaatcacaaaatcattgttgcaacgtccgtggcggaggaaggcatggacttcagc
aagtgcaacttggtcatccgatatgaatatgtcaccaatgagattgccttggtacaagct
agaggccgagcaagagcagaggacagcaagtttgtcctgtttaccagcaaccagcaaggg
gctgctgagaaagaggagctgaacctcatcagggagatgatgatgaatgaagccctggtg
cgtctccaggccaccatagcagaaaaccctcgccgattccgttctgagatcctccagctc
cagaaagaagccaaatctgctcgggatcatgaggccattaatcgcaaaggtcgttatctc
agtgatgacgagtttgaaatacgatgtcagaaatgtaaccagttggcctgtttttctact
gacatccgcacaatcaaggagaccaaccatattgtcaatgaccctgactttggtaccaag
gtcaatgtcaaaccccacccaaagcctggtaatatggggttggatatgaagaagcacagt
aaaatcttttgcaagaaatgtggattggattggggaattggtgtaatttacaaaaatgct
gatttccctgttatcaagattgaaagttttgttgccatagatacaatgggtcgaagagac
tctccgaggaaatggaaaaatgctccttttgaggtgcctgagatttcccatgatgaaatg
accaactacaaacctttcatcgcttag
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integrated database retrieval system
