Halobaculum rubrum: K6T25_06400
Help
Entry
K6T25_06400 CDS
T07963
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hrm
Halobaculum rubrum
Pathway
hrm03030
DNA replication
hrm03410
Base excision repair
hrm03420
Nucleotide excision repair
hrm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6T25_06400 (ligA)
03410 Base excision repair
K6T25_06400 (ligA)
03420 Nucleotide excision repair
K6T25_06400 (ligA)
03430 Mismatch repair
K6T25_06400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrm03032
]
K6T25_06400 (ligA)
03400 DNA repair and recombination proteins [BR:
hrm03400
]
K6T25_06400 (ligA)
Enzymes [BR:
hrm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6T25_06400 (ligA)
DNA replication proteins [BR:
hrm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6T25_06400 (ligA)
DNA repair and recombination proteins [BR:
hrm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6T25_06400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6T25_06400 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6T25_06400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6T25_06400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
HHH
BRCT
DNA_ligase_ZBD
DNA_pol_lambd_f
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QZY00700
LinkDB
All DBs
Position
1211200..1213350
Genome browser
AA seq
716 aa
AA seq
DB search
MSQPAEVDDDDLRYADPDNPYLTEPDTEFAPVEDLDADAAAAEADLLRAAIREHDHRYYA
RNDPLIADRAYDALFARLEKLEETFDLDTADTPTRRVGGGTLDELGEVEHAAPMLSIDQS
GDAEDVREFDERVRRTLDDDADVTYSCEPKFDGLSVEVVYEDGRYVQAATRGDGRVGDDV
TEQVRAIRSVPERLAGDPPETLAVRGEVFIPRDAFQEHNRERVEAGKEPFANPRNAAAGT
LRQLDIDAVAERPLDCFFYDVLGWESDGDVDPNVPTQPDTHLGELDALRSFGLHVNDRAE
LAADIEAAIDYRDRLAEAREDLNYEIDGVVIKVNGRAAREELGTKSRSYRWAFAYKFPAR
HEVTTVEDIVVQVGRTGRLTPVALLDPVDVGGVTVSRATLHNPDEIASLGVSVGDEVRVK
RAGDVIPQVAEVVESRSDAAYEFPDECPVCGTAVERDGPLAFCPNGLACPAQAERAVVHY
ASRGGLDIEGLGEESVEQLREAGLVETLPDLYRLPDRREELIELEGWGETSADNLIREVE
ASTEPELAEFLAALGIHEVGAATARNLARHFGTFETVRNASEAELQEVDDIGETVARTVR
DFFETEQNARVIDDLLRFVDPQSDDTETGDALDGLTVVFTGSLSTARSEAQDLVEAHGAN
ATGSVSGNTDYLVVGESPGTSKREDAEANDVAELDEAAFSDLLAEHGIEWPPESEN
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgagccagccagccgaggtcgacgacgacgacctccgctacgccgacccggacaacccc
tatctgacagagccggacaccgagttcgcgccggtcgaggacctcgacgccgacgcggcg
gcggccgaggccgacctgttgcgcgcggcgatccgggagcacgaccaccgctactacgcc
cgaaacgatccgctgatcgccgaccgagcgtacgacgcgctgttcgcgcggctggagaaa
ctggaggagacgttcgacctcgacaccgccgacactcccacgcgccgcgtcggcggcggc
acgctggacgaactcggggaggtggagcacgccgcaccgatgctgtcgatcgatcagtcg
ggtgacgccgaggacgtgcgcgagttcgacgagcgcgtgcgccgcacgctggacgacgac
gccgatgtgacctactcctgcgagccgaagttcgacggcctctccgtcgaggtggtgtac
gaggacgggcgctacgtgcaggcggcgacgcggggcgacggccgcgtcggcgacgacgtg
accgagcaggtgcgggcgatccgctcggtcccggagcggctcgcgggcgatccccccgag
acgctggccgtgcgcggcgaagtgttcatcccccgcgacgccttccaggagcacaaccgc
gagcgcgtcgaggcggggaaagagccgttcgcgaacccccgcaacgccgccgcgggcacg
ctccgacagctcgacatcgacgccgtcgccgagcgaccgctcgactgtttcttctacgac
gtgctcgggtgggagtcggacggcgacgtcgatccgaacgtcccgacccagcccgacacg
cacctcggagaactggacgcgctgcgctcgttcggcctgcacgtgaacgaccgcgccgaa
ctcgcggccgacatcgaggcggcgatcgactaccgcgaccgcctggccgaggcgcgcgag
gacctgaactacgagatcgacggcgtcgtgatcaaggtgaacggtcgcgccgcccgcgag
gagttggggaccaagtcccggagctatcgctgggcgttcgcctacaagttccccgcccgc
cacgaggtgacgacggtggaggacatcgtcgtgcaggtcggccggaccggtcgcctgacg
cccgtggcgctgctcgacccggtcgacgtgggcggggtgacggtgtcgcgcgccacgctg
cacaaccccgacgagatcgcgtcgctgggggtgagcgtcggcgacgaggtgcgcgtgaag
cgcgccggcgacgtgatcccgcaggtcgccgaggtcgtcgagtcccgcagcgacgcggcc
tacgagttccccgacgagtgccccgtctgcgggaccgcggtggagcgcgacgggccgctc
gcgttctgtccgaacgggctggcgtgtccggcacaggccgagcgtgcggtcgtccactac
gcgagccgcggggggctcgacatcgaggggctcggcgaggagtcggtcgaacagcttcgg
gaggcggggctcgtcgagacgctccccgacctctatcgccttcccgaccgccgcgaggaa
ctgatcgagttggaggggtggggcgagacgagcgcggacaacctgatccgcgaggtcgag
gcgagcaccgagccggagctcgcggagttcctcgcggcgctgggcatccacgaggtcggc
gccgcgacggcccgaaacctcgcgcgccacttcggcaccttcgagaccgtccggaacgcg
agcgaggcggagttgcaggaagtggacgacatcggcgagacggtcgcccgaaccgtccgc
gacttcttcgagaccgagcagaacgcccgcgtcatcgacgacctcctccggttcgtcgac
ccacagtccgacgacaccgagacgggcgacgccctcgacgggctgacggtcgtgttcacc
gggtcgctgtcgaccgcccgcagcgaggcgcaggatctcgtggaggcgcacggcgcgaac
gccaccggctccgtctccgggaacacggactacctcgtcgtcggcgagagtcccgggacg
agcaagcgcgaggacgccgaggcgaacgacgtggcggaactggacgaggcggccttttcg
gacctcctcgccgagcacgggatcgagtggccgcccgagagcgagaactga
DBGET
integrated database retrieval system
