Helobdella robusta: HELRODRAFT_105890
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Entry
HELRODRAFT_105890 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
hro
Helobdella robusta
Pathway
hro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
HELRODRAFT_105890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hro03041
]
HELRODRAFT_105890
Spliceosome [BR:
hro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
HELRODRAFT_105890
Complex C
U5 SnRNP specific factors
HELRODRAFT_105890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
20194785
NCBI-ProteinID:
XP_009015247
JGI:
Helro1_105890
UniProt:
T1EDY3
LinkDB
All DBs
Position
Unknown
AA seq
977 aa
AA seq
DB search
MDGDLYDEFGNYIGPDIESDSDSADELDDRDDDDAEDAHDDMDEGAVVGEEDDEESGMQV
VLHEDKKYYPTAEEVYGPDVETIVQEEDAQPLTEPIIAPIKRRKFAIAEVDVPETTYDLE
FLADIMDNANLIRNIALVGHLHHGKTSFVDCLVEQTHPAFVNREDKDMRYTDTLFTEQER
GLSIKSMPVTLVLPDIRNKSFLLNVFDTPGHVNFSDEVTASIRISDGIVLFVDAAEGVML
NTERLLKHAVQERLSITVCINKIDRLILELKLPPSDAYFKLRHIIDEINNLLSIYSEDQD
DLFISPLLGNVCFASSYYRFSFTLNSFANIYAEAFGGIDDQEFAKRLWGDIYFNSKTRKF
TKKPPNPSSSMRSFVEFILEPLYKIFAQVVGDVDTSLPRLCDELGIKLTKEESKLNIKPL
LKIVLGRFFGNFTGFVSMCVQHIKSPIDNARRKIEHIYTGPLDTELANHMFNCDPDGPLM
VHTTKLYPTYDATTFHALGRIMSGTLSSDQNVRILGENYSLEDEEDSRMGLVNRLWISEA
RYNIEVNRVPAGNWVLIEGIDQPIVKTSTITDVSGNEGAHIFRPFKFNTSSVIKIAVEPV
NPSELPKMLDGLRKVNKSYPLVTTKVEESGEHVILGTGELYLDCIMHDLRKMYSEIDIKV
ADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQIGWPRKRLG
EFFQNKYDWDLLASRSIWAFGPDTTGPNILVDDTLPSEVDKTLLASVKDSIVQGFQWGTR
EGPLCDEPIRNVRFKILDAQISTEPIQRAGGQVIPTARRVAYSAFLMATPRLMEPYFFVE
VQAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFMPAIDSFGFETDLRTHTQGQA
FCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATYLAREFMVKTRRRKGLSEDVSINKFFDD
PMLLELAKQDVVLSYAM
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgatctgtacgatgagttcggcaattatatcggccccgatattgaatcagat
tcggattcggcagatgaactagatgatcgtgacgatgacgacgctgaagacgctcacgat
gatatggatgaaggtgccgttgtaggcgaggaggatgatgaggagtcagggatgcaggtg
gttctgcatgaggataagaagtactaccccactgctgaagaagtgtatggacctgatgtc
gagacgatagtgcaagaagaggatgcacagccattaactgaaccaatcattgctcccatc
aagagacgaaagtttgcaattgcagaagtcgatgttcctgagacaacttatgatttagag
ttcttagcggacattatggataatgccaatctgataaggaacattgcattggtcggccat
ctgcaccatggcaagacctctttcgttgactgcttggtggagcagactcatccagcgttc
gtaaatagggaagataaagatatgagatacactgatacattattcactgagcaagagaga
ggtctgagtatcaaatcaatgccagtaacattggtcctacctgatatccggaacaaatca
tttctactcaatgtgtttgatactccaggtcatgtcaatttctcggatgaggtgacagcg
tccatcaggatatcagatggcatcgtcttgtttgtcgacgcagctgaaggagtgatgttg
aacactgaaagattattgaagcacgcggtccaggagaggttgtctataacagtttgcatc
aacaagattgacaggctgatcctggagttgaagctgcctcccagcgacgcctacttcaaa
ttgaggcacatcattgatgagattaataatcttttgagcatctactcagaagaccaagat
gacctcttcatatcacccctccttggaaatgtctgcttcgccagttcgtactacagattt
agtttcacactgaactcctttgctaatatctatgccgaggcgtttggtggtatagatgac
caggagtttgcaaagaggctatggggagatatttacttcaatagcaaaacacgtaaattc
acgaagaagccaccgaatccatccagtagcatgagaagttttgttgagtttatactggag
cccctctataaaatatttgcccaggtcgttggggacgtcgatacgagcctgccgaggctc
tgtgatgagttgggcatcaaactgacgaaggaagaaagcaaactgaacattaaaccactg
ctgaaaattgttttgggcaggttctttggaaattttacaggttttgtgagtatgtgtgtg
cagcatataaaatcccctatcgacaatgccagaaggaagatagaacacatatacaccgga
cccctcgatacagaacttgccaatcatatgttcaactgtgatccagatggacccttaatg
gtgcacactacgaaattgtaccccacgtatgatgccacgacctttcatgctctgggtcgt
attatgtctggtacgctgtcctccgaccaaaatgtcaggatccttggggagaattactct
cttgaggatgaggaagactctaggatgggattggttaatagactttggatttctgaagcc
agatacaacatagaggtgaacagggtgccggccgggaactgggtactcatcgagggtatc
gaccagccgatcgtcaaaacatccaccatcactgacgtcagtgggaacgagggggcgcac
attttcaggcccttcaaattcaacacctcatctgtcattaaaatcgctgtggaaccggtc
aacccatccgaacttcccaaaatgttggatggactgaggaaggttaataagagctaccct
ctcgtcactactaaggtggaggaatcgggtgagcacgtaatcctcggcacaggtgagttg
tacctggattgcatcatgcatgacctcaggaagatgtactcggaaattgacataaaagta
gcggacccggttgtgagcttctgtgagacggtcgttgaaacatcatccctcaaatgcttc
gctgaaacacccaataaaaagaacaagatcacgatgatagcagaacctctggagaagggc
ttagcagaggacattgagaacgaggtcgtacaaataggctggcctaggaagaggctggga
gagttcttccagaacaaatatgactgggacttgctggcctccaggtccatctgggccttc
ggaccggacacaactggacccaacatcctcgtcgatgataccctgccctccgaggtggac
aagacgttgttggcctctgtgaaggatagcatcgttcagggtttccagtggggtacgagg
gaagggcccctctgtgatgaaccgataaggaacgtgaggttcaagatcttggatgcacag
atctcgacggagcccatccagcgagccggggggcaggtcatcccaaccgccaggagagtg
gcctactcggcttttcttatggctacaccaaggctgatggagccatatttttttgtcgaa
gtccaagcaccagctgattgcgtgtcagctgtttatacagtacttgctaggaggagaggt
cacgtgactcaggacgctccggttccgggctcaccgctctacaccattaaggcgttcatg
ccggccatcgactcgttcgggttcgaaaccgaccttaggacacatacccaaggacaggcg
ttttgcctgtccgtctttcatcattggcagattgtgccaggtgatccactggacaagagc
atcgtaatcagaccactggaaccacaacctgccacctatctggccagggagttcatggtg
aaaaccaggaggagaaagggcttgagcgaggatgtgagcatcaacaaattctttgatgac
cctatgttactggaattggccaaacaagatgtcgtactctcttatgctatgtaa
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