Halosimplex rubrum: HZS55_21075
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Entry
HZS55_21075 CDS
T06687
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hrr
Halosimplex rubrum
Pathway
hrr03030
DNA replication
hrr03410
Base excision repair
hrr03420
Nucleotide excision repair
hrr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HZS55_21075 (ligA)
03410 Base excision repair
HZS55_21075 (ligA)
03420 Nucleotide excision repair
HZS55_21075 (ligA)
03430 Mismatch repair
HZS55_21075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrr03032
]
HZS55_21075 (ligA)
03400 DNA repair and recombination proteins [BR:
hrr03400
]
HZS55_21075 (ligA)
Enzymes [BR:
hrr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HZS55_21075 (ligA)
DNA replication proteins [BR:
hrr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HZS55_21075 (ligA)
DNA repair and recombination proteins [BR:
hrr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HZS55_21075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HZS55_21075 (ligA)
MMR (mismatch excision repair)
DNA ligase
HZS55_21075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HZS55_21075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QLH79634
UniProt:
A0A7D5TRC1
LinkDB
All DBs
Position
complement(4184736..4186829)
Genome browser
AA seq
697 aa
AA seq
DB search
MSDDAADPPADNPYLDEPPTDFDPVEALTEADAAVQAERLREAIRYHDHRYYVENDPAID
DRAYDALFSRLRDLEEKFDVRTEDSPTRRVGGAPRDELPDVEHVAPMRSIDQGGEAEAVR
EFDRRVRQGLESADWAGELEYYCEPKFDGLSVEVVYEDGVFQRAATRGDGQAGDDVTENV
RTIPSVPQRLRGDHPDFLAVRGEVYMPKPAFQEYNRELVERGDDPFANPRNAAAGTLRQL
DPSVTAERPLSVFFFDTLAGTEFDTRWEMHETLPEWGLRVCEKTDLKPDIEAAIDYRDAR
LDERDDLDYEIDGVVISVDDTDACEELGATSRAPRWAFAYKFPARSEHTTVRDVVVQVGR
TGRLTPVALMDPVEVGGVTVSRASLHNPAEIERLGVGIGDEVRVRRAGDVIPEVAEVTDA
DGDGHFAFPETCPVCASPVERDGPMAFCSGGLGCRAQRERSVQHYASRKGLDIEGVGEER
VQQLLDAGLVADVADLYELTVEDLTDLEGWGARSAENLIAELDEAREPPLADFLTAIGIP
EVGETVAASLARYFGTFDAVRAAGEDDLQAVEDVGPTVAAEIRDFFDSEANRDVLDRLLA
HVDPREAETETGDALDGLTFVFTGSLDGYTRGDAQDLVERAGGSATSSVSSNTDFLVLGS
NPGQTKRDDAAEHGVETLDGVEAFESKLREYGVEVGA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgcggccgacccgcccgcggacaacccctatctcgacgagccgccgacc
gacttcgacccggtcgaggccctgaccgaggccgacgccgcggtccaggccgagcggctc
cgcgaggcgatccgctaccacgaccaccgctactacgtcgagaacgaccccgctatcgac
gaccgcgcctacgacgctctcttttcccgactgcgcgacctcgaggagaagttcgacgtc
cgcaccgaggacagcccgacccggcgcgtcggcggtgcgccccgcgacgaactccccgac
gtggaacacgtcgcgcccatgcgctcgatcgaccagggcggcgaggccgaggcagtccgg
gagttcgaccgccgcgtccggcaggggctcgaatcggccgactgggcgggcgaactcgag
tactactgcgagccgaagttcgacggcctctccgtcgaggtcgtctacgaggacggcgtc
ttccagcgggcggccacccgcggcgacggtcaggcgggcgacgacgtgaccgagaacgtc
cgcaccatccccagcgtcccccagcgcctccggggcgaccaccccgacttcctcgcggtt
cgcggcgaggtgtacatgcccaagccagcgttccaggagtacaaccgcgagctcgtcgaa
cggggcgacgaccccttcgccaacccccgcaacgccgccgccgggacgctccggcaactg
gacccgtccgtgacggcggagcgcccgctctccgtgttcttcttcgacaccctcgccgga
acggagttcgacacccgctgggagatgcacgagacccttcccgagtgggggctccgcgtc
tgcgagaagaccgacctgaaaccggacatcgaggccgccatcgactaccgcgacgcccgg
ctggacgaacgcgacgatctggactacgagatcgacggcgtcgtgatctccgtcgacgac
accgacgcctgcgaggagctgggcgccacctcgcgagcgccccgctgggcgttcgcctac
aagttccccgcccgcagcgagcacacgacggtccgggacgtggtcgtccaggtcggccgg
accggccggctcaccccggtggcgctgatggaccccgtcgaagtcggcggcgtcacggtc
tcgcgggcctccctgcacaaccccgccgagatcgagcgcctcggcgtggggatcggcgac
gaggtccgcgtccgccgcgcgggcgacgtgatccccgaggtcgccgaggtcaccgacgcc
gacggcgacggtcacttcgcgttccccgagacctgcccggtctgcgccagccccgtcgag
cgcgacggtccgatggccttctgctcgggggggctgggctgtcgcgcccagcgcgagcgg
tcggtccagcactacgcctcccgcaagggcctcgacatcgagggggtcggcgaggagcgc
gtccagcaactgctcgacgccggcctcgtcgccgacgtggcagacctctacgagctgacg
gtcgaggacctgaccgacctggaggggtggggggcgaggagcgccgagaacctgatcgcc
gaactcgacgaggcccgcgagccgccgctcgccgatttcctcaccgccatcggcatcccc
gaggtcggcgagaccgtcgccgcgtcgctcgcccggtacttcggcaccttcgacgccgtc
cgcgcggccggcgaggacgacctccaggccgtcgaggacgtggggccgaccgtcgcggcg
gagatccgcgacttcttcgacagcgaggccaaccgcgacgtgctcgaccggttgctcgcc
cacgtcgacccccgggaagccgagacggagaccggtgacgcgctcgacgggctcaccttc
gtcttcaccgggtcgctcgacggctacacccgcggcgacgcccaggatctggtcgagcgg
gccggcggctcggcgacgagttcggtgtcgagcaacacggacttcctcgtcctcgggtcg
aatccgggccagaccaaacgcgacgacgccgccgaacacggggtcgagacactggacggc
gtcgaggcgttcgagtcgaaactgcgggagtacggcgtcgaggtgggggcctga
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