Hymenobacter sp. BT18: HER32_19885
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Entry
HER32_19885 CDS
T06970
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03030
DNA replication
hrs03410
Base excision repair
hrs03420
Nucleotide excision repair
hrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HER32_19885 (ligA)
03410 Base excision repair
HER32_19885 (ligA)
03420 Nucleotide excision repair
HER32_19885 (ligA)
03430 Mismatch repair
HER32_19885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrs03032
]
HER32_19885 (ligA)
03400 DNA repair and recombination proteins [BR:
hrs03400
]
HER32_19885 (ligA)
Enzymes [BR:
hrs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HER32_19885 (ligA)
DNA replication proteins [BR:
hrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HER32_19885 (ligA)
DNA repair and recombination proteins [BR:
hrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HER32_19885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HER32_19885 (ligA)
MMR (mismatch excision repair)
DNA ligase
HER32_19885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HER32_19885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
ABC_tran_CTD
Zn_ribbon_NUD
Zn_ribbon_FGT1_2
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QIX63310
LinkDB
All DBs
Position
complement(4635191..4637338)
Genome browser
AA seq
715 aa
AA seq
DB search
MSDLSAIQQKIQRLTEQLHHLNYQYYQNDISEVSDQEFDALLRELQELERQYPELALANS
PTQRVGGTITKQFPTVEHRFPMLSLANTYSEADLREFDERVRRGLEGASYQYVCELKFDG
VAMSLTYENGQLTRGVTRGDGTRGDVVTSNVRTIKTLPLHLRPAPGQPQDFEVRGEIFMP
LSVFNDLNQEREQNGEALLANPRNAASGTLKLQDSAQVANRRLRFYAYSYLSPRRTDFPT
HSAALAALKQWGLPVSDTWRLCGSIEEVLNFIHQWEKARFELPVATDGIVIKVDDLQQQE
VLGFTAKSPRWAIAYKYPAEAARSQLLGIQYQVGRTGAVTPVALLTPVPLAGTIVKRASV
HNANQIAALDLRVGDTVFVEKGGEIIPKITGVDVAARPAQAEPIVYPTECPACGTPLVRP
EGEAHFRCPNDRGCPPQLKAKLEHYVSRKALNIDGLGAETVGRFFDLGLVTDAASLYDLP
AKAAELAQLERLGEKSVQRLVAGLAQSQQVPFDRVLYGLGIRYVGETVAEKLAYHYRTID
ALAAASGAELAAVPEVGGVIAESVAAWFGQPENRDLVERLRAAGVQLALTGEVPQAKSDR
LAGQTFVLSGVFAEHSREELQELIQLHGGKITGSISKKLSFLVAGDKMGPAKREKATELK
VPIISEAELLAMLPTGEEPAASASEPTDSLTSGAEAAPQRGPQPPVGTNGQTSLF
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacttgagcgccatacagcagaaaatccagcgcctcaccgagcagctgcaccac
ctcaactaccagtattaccagaacgatatttccgaggtatcggaccaggagtttgatgcc
ctgctgcgggagttgcaggagctggagcggcagtaccccgaactggccttagccaactcg
cctacccagcgcgtgggcggcaccatcaccaaacagtttcctacggtggagcaccgtttt
cccatgctcagcctggccaacacctattctgaggccgacttgcgggagtttgatgagcgg
gtccgccggggcctcgaaggtgcctcctaccagtatgtgtgtgagctgaagttcgatggc
gtggccatgagcctgacctacgagaatggccagctcacgcgcggcgtcacgcgcggcgac
ggtacccgcggcgacgtggtaaccagcaacgtgcgcaccatcaaaaccctgcctttgcac
ctgcgcccggcacccggccaaccccaggattttgaggtgcgcggtgaaatcttcatgccg
ctttccgttttcaacgacctgaaccaggagcgtgagcaaaatggcgaagccctgctggcc
aacccgcgcaacgccgcctcgggcacgctcaagctccaggactcggctcaggtggccaac
cgccggctgcgcttctacgcctacagctaccttagcccgcgccgcaccgattttcccacc
cacagcgccgccctcgccgccctgaagcagtggggcctgccagtatccgatacctggcgc
ttgtgcgggtccatcgaagaagtactaaacttcattcatcagtgggagaaagcgcggttc
gagttgccggtagctaccgatggcatcgtgataaaagtagacgacctgcagcagcaggaa
gtgctgggcttcacggctaaaagtccacgctgggccattgcgtacaagtacccggccgag
gctgcccgctcccaactcctgggcattcagtaccaggtagggcgcaccggggccgtcacg
cccgtagccttactcacgcccgtgcccctggccggcaccatcgtcaagcgcgcttcggtg
cacaacgccaaccagattgccgccctcgacctgcgcgtgggcgacaccgtttttgtggaa
aaaggcggggaaatcattcccaagattacgggcgtggatgtagccgcccggcccgcccag
gccgaacccattgtttaccccaccgagtgcccggcctgtggcacgccgctggtgcggccc
gagggtgaagcacacttccgctgcccaaatgaccggggctgcccgccccagctgaaagcc
aagctggagcactacgtttcgcgcaaggcgctgaacatcgacggcctgggcgccgaaacc
gtcggtcgtttctttgacttagggttggtgacggacgcagcttccctctacgacctgccc
gccaaggccgccgagctggcccagctggagcgcctgggcgaaaaatcggtgcagcggctg
gttgccgggctggcgcaaagccagcaggtgccgtttgatagagtgctctatgggctgggt
atccgctacgtgggcgaaaccgtagccgagaagctagcctaccactaccgcaccatcgac
gcgctggcggcagcctcgggggccgagctggcggccgtgccagaagtgggtggcgtcatt
gctgaatcggtggccgcgtggtttgggcagcccgaaaaccgcgacctggttgagcggctg
cgggcggcaggcgtccagctagcccttaccggcgaagttccccaggcaaaaagtgaccgg
ctggctgggcaaacctttgtgctttcgggcgtatttgccgagcacagccgggaggagctg
caggaactcattcagctgcacggcggcaaaatcacgggctccatcagcaagaagctttct
ttcctggtagccggcgacaaaatgggtcctgccaagcgcgaaaaagccactgagctgaaa
gtacccatcatttcggaagccgagctgctggccatgctgcccacgggcgaggaacccgcg
gcttcagcgtccgagcctactgacagcctcacgtccggcgcggaggcagcgccgcaacgt
gggccgcagcccccggttggcaccaacgggcagacttcgctgttttag
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integrated database retrieval system
