Hirundo rustica (Barn swallow): 120754021 Help Entry 120754021         CDS       T09369                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism hrt  Hirundo rustica (Barn swallow) Pathway hrt04115   p53 signaling pathway hrt04145   Phagosome hrt04148   Efferocytosis hrt04350   TGF-beta signaling pathway hrt04510   Focal adhesion hrt04512   ECM-receptor interaction hrt04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:hrt00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     120754021 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120754021 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     120754021 (THBS1)    04148 Efferocytosis     120754021 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     120754021 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     120754021 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     120754021 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:hrt04131]     120754021 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:hrt00536]     120754021 (THBS1) Membrane trafficking [BR:hrt04131]  Endocytosis   Phagocytosis    Opsonins     120754021 (THBS1) Glycosaminoglycan binding proteins [BR:hrt00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120754021 (THBS1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 cEGF TSP1_ADAMTS TSP1_CCN Laminin_G_3 EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  120754021 NCBI-ProteinID:  XP_039923036 LinkDB All DBs Position 6:complement(32819858..32835690) Genome browser AA seq 1177 aa AA seqDB search MRPATALCLLLVVLGSSDAKRTAESRNDDNSVFDLFELIGFMRKGAGRRAPGVYLVKGPE SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS GHVFSLVSNGKAGSLDLSLSVDGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK MENAELDMPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS SSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL QDRVRKVTEENEIIAKVVQITPGACIHNGVLHKNKEEWTIDSCTECTCQNSATICRKVSC PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP CEGEARENKACQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG EARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIHCQDIDECK EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMTNKQVCKPRNPCTDG THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC KKDNCPNLPNSGQEDYDKDGIGDACDSDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR CDNCPYNHNPDQTDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC DNCPLEHNPDQEDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVEIS ETDFRKFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS NT seq 3534 nt NT seq  +upstreamnt  +downstreamnt atgaggccagcgactgctctctgcctccttctcgtcgtgctcggcagctcagacgccaag cgcactgcagagtccaggaatgatgataacagtgtcttcgatctctttgaactcattggc ttcatgcggaagggagccgggcgccgggcccccggggtgtacctggtgaagggaccggaa tcctccagccctgcttaccgcattgaagatgccagtcgcatccctgctgtccctgactcg aagttccaagacttattagatgccattcatgctgagaagggcttcattctcctggccact ctccggcaagccaagaaaagcagaggcacactgctctccgtggaacagaaagatggctct ggtcatgtcttcagcctagtatcaaacggcaaggcaggctccctggacctgagcctttct gttgatggcaagcagcagttagtgtcagtagaggatgtcttgctggctactggacactgg aagaatatcaccctgtttgtgcaggaggaccgagctcagctctatgtggggtgtgagaaa atggagaacgctgaactggacatgcccatccagaacatcttcactagggacctggccagc agtgccaggctccgtattgccaaagggggagtcaacgacaacttccagggtctgctgcag aatgtgcggtttgtgtttggaacaactctggaaactatcctgcggaacaaaggctgctcc agctccactagtgcaatcattactttggacaaccccatcaatggttccagcccagctatc cgcactaattacatcggccataaaacaaaggacatccaagcagtctgtggattttcctgt gatgagctgacaaatatgtttgtggaactgcaagggctccggtccatggttacaacactt caagacagagttcgcaaagtgactgaagaaaatgaaatcattgccaaagtagtgcagatc actcctggagcgtgcattcataatggtgtcttgcacaaaaataaagaagagtggactatt gacagctgcactgaatgtacttgccagaactctgccactatatgccggaaagtgtcctgt cctctcatgccttgttccaatgccactgtgcctgatggggagtgctgccctcggtgctgg cctagcgactacgcagatgatggatggtctccttggtctgaatggacctcgtgttctgtg acctgtggtaatgggattcagcagagaggccgttcctgtgacagtctcaataaccgctgt gagggctcctctgtgcagactcggacttgccaccttcaggagtgcgataagagatttaaa caggatggtggctggagtcactggtcgccgtggtcatcatgttctgtcacttgtggcacg ggcatcatcactagaattcgtctttgcaattctccagtaccacagctgaatggcaaacct tgtgagggtgaagcaagagaaaacaaagcctgccagaaagatccttgcccaattaatggc aactggggaccatggtctccatgggatgcgtgcacagtgacatgtggaggaggacttcag aaacggagccgtctctgcaataatcccgagcctcagtatggtgggaagacttgcgtaggt gaagctagagggactcaggtctgcaacaaacaggactgtccaattgatgggtgtttgtct aatccctgctttgcgggggctacgtgcaccagtgcccctgatggttcctggaagtgtggt gcctgtcctgctggctaccatggtgatggtattcactgccaagatattgatgagtgcaaa gaggttcctgatgcctgctttgtcttcaacggagtgcacaggtgtgagaatactgaacct gggtacaactgtctgccttgtccaccacgtttcactggaacacagccatttggccgcagt gttgaggatgccatgactaacaaacaggtctgcaagccacgtaatccatgcacagatgga acacatgactgcaacaagaatgccaaatgcaattaccttggccactttagtgaccccatg tatcgctgtgaatgtaaaccaggctatgctggcaatggcataatctgtggagaagatact gacttggatggatggccaaatgagaacctggtttgtgttgccaatgctacttaccactgt aaaaaggataactgccctaatctgcctaactcagggcaggaagactatgataaggatggg attggtgatgcctgtgacagtgatgatgatgatgatggcattcctgatgaccgggacaac tgtccattcatctacaacccacagcagtatgactacgacagggatgatgttggtgaccgc tgtgacaactgtccctacaatcacaaccctgatcaaactgacactgacaacaatggagag ggagatgcatgtgcaatagatattgatggagatggggtgcttaatgaaagagacaactgc cagtatgtctacaatgtagaccagagggataccgacttggatggtgttggagatcagtgt gataactgtccactggagcacaaccctgaccaggaagacactgattctgatctcataggt gatcagtgtgacaacaaccaggacatagatgaagatggacatcaaaataatcttgataac tgcccctatgtacccaatgccaatcaagctgaccatgacaaggatggaaaaggtgatgcc tgtgaccatgatgatgacaatgatggtatccctgatgacaaagataactgcagattggtt gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac tttgaccaagacagtgtgccagacattgatgatatctgccctgaaaatgtggaaatcagt gagactgatttccgaaaatttcagatgattcccctggatcccaaaggaacatcccaaaat gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgac cctggccttgcagttggttttgatgaattcaatgctgtggacttcagtggtaccttcttt atcaatacagaaagggatgatgattatgctggctttgtgtttggctaccagtctagcagt cgtttctatgttgtcatgtggaagcagatcacccagtcttactgggactccacaccaacc aaagctcaaggctactcaggtctctccatcaaagttgtgaattccaccactggtccagga gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg tggcatgatcctcgtcacataggctggaaggacttcacagcatacagatggcgacttagc catagacccaagaccggctacatcagggttgtaatgtacgaagggaagaaaatcatggca gactcaggaccaatctacgataaaacctatgctggtggtcggctgggattatttgtcttc tctcaagaaatggtgttcttctcagaccttaaatatgaatgcagagattcataa

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