Hirundo rustica (Barn swallow): 120760380
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Entry
120760380 CDS
T09369
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X2
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120760380 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hrt03000
]
120760380 (KDM2B)
04121 Ubiquitin system [BR:
hrt04121
]
120760380 (KDM2B)
03036 Chromosome and associated proteins [BR:
hrt03036
]
120760380 (KDM2B)
Enzymes [BR:
hrt01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120760380 (KDM2B)
Transcription factors [BR:
hrt03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120760380 (KDM2B)
Ubiquitin system [BR:
hrt04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120760380 (KDM2B)
Chromosome and associated proteins [BR:
hrt03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120760380 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120760380 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
120760380
NCBI-ProteinID:
XP_039936452
LinkDB
All DBs
Position
17:complement(2847611..2953826)
Genome browser
AA seq
1253 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEKSQE
PTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEG
AEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEP
KRALNNSERLHRFSKGLNGTPRELRHHQLMPGLRSTPRGIARPPPSLSPPKCIQMERHVI
RPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWT
KIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIA
VSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELRLAGL
DITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTD
QCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcaaagaaagactctggaagaagattgcgctgcatc
ggccgaaggcggtacgatgagaacgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgccggatcgtggatgtgatggatgtgaacaca
cagagaggagtggagatgagcatgtctcagtttgtgcggtactacgagaccccagaggcc
cagagggagaagctctacaacgtcatcagcctggagttcagtcacaccaagctggagaac
attgtcaagcggcccaacgtggtggacttagtcgactgggtggataatatgtggccacag
cacttgaaggagagacagacagatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagattttctggctgattcca
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atctttctgggagacagggtggaacggtgccaaagaattgagctgaaacaaggctacacg
ttcttcattccttcagggtggatacacgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccgctatcctttctactatgagatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgac
agcttggataagaactccaaatccttggtggatggctcctcctcacccaacagcacacac
tcagaggggaaggaggctgcagggaggaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagacgacagcgtaaaatcaacgaccccgacggactatccc
aaaacacccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttcccgaaggcattgaagacccgcaggctctcctggaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtggggcggcccaaggggaagctgggcgct
gcctctgcggtgaagctcgcggccaaccggagcacggcgggcgcgcggcggcggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggaccgagtgcggcgagtgccacttctgcaag
gacatgaagaagttcgggggccccggcaggatgaagcagtcctgcatcatgaggcagtgc
atcgctcccgtgctgcctcataccgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccacgcagggaaaactggaaaacaa
aagcgcggaccaggatttaaatacgcatcaaatctcccgggctcgttgctgaaggagcag
aaaattaacagagacaacaaggaagtgccagatgctgccaaacggaaaggggactgcgag
gagactcccaggaggaaatcggaggaacattccaaaaaggctccggttgactcaatcctg
aggagaaagtctgacgaagtgcatctgtggaggaaacggaaattcgagaaatcccaggaa
cccacgatgagaaagcggcggcgatcgtggaaggccccggatgaccgaactgccatgatc
aaacccctgcggcgcctcaagcaggagcccgaggatgagctgccagaagcaccccccagg
tccaaggacagcgaccagtctcggtccagctcgcccacagccgggcccagcacggagggc
gccgagcccagggacaagaagaaattcaagatgaggaggaaaaggcggcttcccaataag
gaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaaccgagaacagc
cttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaacgaggaaccc
aagcgcgcgttgaacaacagcgagagactccataggttcagcaaagggttgaacgggact
ccccgggagctgaggcaccaccagctcatgcccggcctgcgcagcaccccccggggaatc
gcccggcccccgccctcgctgtcgccccccaagtgcatccagatggagcggcacgtcatc
cggccacctcccatcagcccccctccggactcgctgcccctggatgacggggcagcccac
gtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagacttgtgc
atctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagattatggacc
aaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcattattagg
agacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctgagttgg
cttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctcatggattgca
gtgtcggcactttgtagctccagctgtcccttgctgcgaactctggacgtgcagtgggcg
gaagggctgaaagacgcacaaatgagagacctcctgtccccgcccacggacaaccggcca
ggtcagatcgacaaccggagcaagctacggaacatcgtggagctgcgtctggccgggctg
gatatcacggacgcttcgctgcggctcatcatcaggcacatgcccctgctctccaaactc
aatctcagttactgtaaccacgtgacagatcagtctattaacctgctgaccgccgtcgga
accaccacgcgggattcgttaacggaaattaatttatcagactgcaataaggtcactgac
cagtgcctgtcttacttcaaacgttgtgggaacatctgccagatcgacctgaggtactgc
aagcaagtgacgaaggagggctgtgagcagttcatagcggagatgtccgtaagtgtccag
ttcgggcaggtggaagaaaaacttctgcaaaaactgagttag
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