Hirundo rustica (Barn swallow): 120765687
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Entry
120765687 CDS
T09369
Symbol
RIGI
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04622
RIG-I-like receptor signaling pathway
hrt04623
Cytosolic DNA-sensing pathway
hrt05164
Influenza A
hrt05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120765687 (RIGI)
04623 Cytosolic DNA-sensing pathway
120765687 (RIGI)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
120765687 (RIGI)
05168 Herpes simplex virus 1 infection
120765687 (RIGI)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hrt04054
]
120765687 (RIGI)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120765687 (RIGI)
Pattern recognition receptors [BR:
hrt04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
120765687 (RIGI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
120765687
NCBI-ProteinID:
XP_039946716
LinkDB
All DBs
Position
Z:complement(70561303..70584456)
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AA seq
928 aa
AA seq
DB search
MTAEEKRNLRCYRRYIERSLNPVYILSNMTDWLSDEVKERVRKEEEKGVTAAAALFLDAV
LLLEAEGWLRGFLDALVAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEIDPVA
ILPYINTCLIERECDEILQISEYRSKAAGITKLIECLCRSDKENWPKSLQLALDDAGYYN
ASQLWNIREDSGKDVDGEMTDASENHFETMMTFSEEAECDNLSENISSISESIYESSSVY
EPKKARSYQIELAQPAIDGKNTLICAPTGSGKTFVALLICEHHLQSVSSERKAKVAFLAT
KVPVYEQQKNVFRQHFERSGYSVQGICGETVANISVEKVIQDSDITVLTPQILVNSMEKG
ILSSLSVFTLMIFDECHNTTGNHPYNVLMARYLDQKLDSPASQLPQIVGLTASVGIGNAK
TTDETVDHVCTLCSCLDIQAISTVRENKEDLQRFRNKPETHIRWVKMRAQNHFADIISYL
MSETEVLMRKTFSVGDTISQINKNYFGTQRYEHWIISTQRKCRLLQLEDKEKESNICRHI
FICTEHLRKFNDALIISEDARIEDALAYLNEFFTNVKNGPYTALEKQLMEKFQEKEQELT
ALSKDESNENPKLEELACILDEAYRYNPQTRTILFAKTRALVTALKKWIEANPLLSHIKT
DVLMGKGRKDHKTGMTLPMQKDVLDAFRNDKDTRLLIATSVADEGIDITECNLVVLYEYF
GNVTKMIQVRGRGRARGSKCILVTSKTEVVENEKQNSYKEEMMNAAIEKLQNWDEAKFAR
RIHQLQIKEKIQRDSRRNETKHKVVGGKKNLLCGKCKAYVCSTDDIRIIKESHHTVLGDA
FKERYISKPHRKPVQFDGFEKKSKMHCRNIECQHDWGITVKYKTFDNLPVIKIRSFVLEN
VETGTQMDFQKWKSINLSLKDFDEETSS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggaggagaagcgtaacctgcggtgctaccggcggtacatcgagaggagcctg
aaccccgtgtacatcctcagcaacatgacggactggctgtccgacgaggtgaaggagaga
gtccgaaaggaggaggagaagggagtgacggcggccgccgcgctgttcctggatgccgtg
ctgctgctggaggcggagggctggctccggggcttcctggatgccctggttgcagcaggt
tatactggactggcagaagcaattgaaaactgggacttcagcaaactggaaaaactggag
ctgcacaggcagctgttgaagcggatagaagcaacaatgctagaaattgatcctgtagca
atcttgccatacataaacacatgcctgatagagagggagtgtgatgagatcctgcagatc
agtgaatacagaagcaaagcagccgggataactaaactcattgaatgcctctgtcgctcg
gataaggaaaactggcccaaaagtctgcagctggcattggatgatgcaggctattacaac
gcaagtcaactgtggaatataagagaagacagtggcaaagatgttgatggtgaaatgacg
gatgcctccgagaatcactttgaaaccatgatgacattttctgaagaagcagaatgtgat
aatctcagcgaaaatatctcttcaatttcagaaagcatctatgagtcttcatctgtctat
gaaccaaagaaggctcggagctaccagattgagcttgcacagcctgctattgatgggaag
aacacattgatttgtgccccaacaggatctggaaaaacttttgtggcacttctgatttgt
gaacatcatttgcaaagcgtttcctcagaacgaaaggcaaaagttgccttccttgcaacc
aaagtgccagtgtatgagcaacagaaaaatgtatttaggcagcattttgaaagaagtgga
tactctgttcaaggaatttgtggtgaaacggttgcaaatatctctgtagaaaaagttata
caggacagtgacatcactgtgctaacaccccagattcttgtgaatagcatggagaaaggg
atccttagctccctctccgtcttcactctgatgatatttgatgagtgccacaacactaca
ggcaaccacccttacaatgtgttgatggctagatacctggatcaaaaattagactcccct
gcaagccagctgcctcagattgtaggattaactgcttctgttggaattggtaatgccaag
accactgatgaaactgtagaccacgtctgtaccctttgctcctgcctagacatacaggcc
atatccactgtcagagagaacaaagaagatcttcagaggtttagaaacaagccagaaaca
catatcaggtgggttaaaatgcgagctcagaatcactttgcagacattatctcatatctg
atgtctgagacagaggtgttgatgaggaagactttctcagtgggagataccatctcccaa
atcaacaagaattactttggaacacagagatatgaacactggataatttccactcagagg
aaatgcagactgttgcaactggaagataaggagaaggagagcaatatttgtagacacatt
ttcatttgtactgaacatttgcggaaattcaatgatgctctcattattagtgaagatgcc
cgcatcgaagatgctttagcctacctaaatgaatttttcacaaatgtaaaaaatggacca
tatacagcgttagagaagcaactgatggagaaatttcaagagaaagagcaagagctgact
gccctttcaaaagatgagtcaaatgagaatccaaagttggaagagcttgcttgcatcctg
gacgaagcataccgctataacccacagactcgcactattctctttgccaagacaagagcc
ttagtaactgctttgaagaagtggatagaagcaaaccctctacttagtcacataaagaca
gatgtgttgatgggtaagggaagaaaagatcataaaacaggtatgaccctgccaatgcag
aaggatgtactggatgcattcagaaatgacaaagataccagactgctaattgctacatct
gttgctgatgaaggcattgatattactgaatgcaaccttgtggtgctctatgaatacttt
ggtaatgtcaccaaaatgatccaagtcagaggtcgtggaagggcaagaggcagcaagtgc
atccttgtgacgagcaaaacagaagtggttgagaatgaaaaacaaaacagttacaaggaa
gaaatgatgaatgcagctatcgaaaagctacagaactgggatgaagcaaaatttgcaaga
aggatacatcagctgcaaatcaaagaaaagatacaacgagattccaggaggaatgaaaca
aaacataaagtagtcggggggaaaaaaaaccttttgtgtggaaaatgcaaagcctatgtc
tgcagtacagatgatatcagaattataaaggaatctcatcatactgtcctaggtgacgca
ttcaaggagcgttatatatcaaagccccacaggaaaccagttcagtttgatggttttgag
aaaaaaagcaagatgcattgccgaaatattgagtgccagcatgactgggggatcacagtg
aagtacaagacatttgataatctaccagtgatcaaaatcagaagctttgtactagagaat
gttgaaactgggacacaaatggattttcagaaatggaaaagtattaatttatctttgaag
gattttgatgaagaaacatccagctga
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