KEGG   Homo sapiens (human): 2961
Entry
2961              CDS       T01001                                 
Symbol
GTF2E2, FE, TF2E2, TFIIE-B, TTD6
Name
(RefSeq) general transcription factor IIE subunit 2
  KO
K03137  transcription initiation factor TFIIE subunit beta
Organism
hsa  Homo sapiens (human)
Pathway
hsa03022  Basal transcription factors
hsa05203  Viral carcinogenesis
Disease
H00866  Trichothiodystrophy
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    2961 (GTF2E2)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    2961 (GTF2E2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsa03021]
    2961 (GTF2E2)
Transcription machinery [BR:hsa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     2961 (GTF2E2)
SSDB
Motif
Pfam: TFIIE_beta TFA2_Winged_2 TFA2_E-tether
Other DBs
NCBI-GeneID: 2961
NCBI-ProteinID: NP_002086
OMIM: 189964
HGNC: 4651
Ensembl: ENSG00000197265
UniProt: P29084
Structure
LinkDB
Position
8:complement(30578318..30658236)
AA seq 291 aa
MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG
SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM
TEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQK
AVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQ
GISSMQESGPKKVAPIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDITSSK
NT seq 876 nt   +upstreamnt  +downstreamnt
atggatccaagcctgttgagagaaagggagctgttcaaaaaacgagctctttctactcct
gtagtagaaaaacgttcagcatcttctgagtcatcatcatcatcgtcaaagaagaagaaa
acaaaggtagaacatggaggatcgtcaggctctaaacaaaattctgatcatagcaatgga
tcatttaacttgaaagctttgtcaggaagctctggatataagtttggtgttcttgctaag
attgtgaattacatgaagacacggcatcagcgaggagatacgcatcctctaaccttagat
gaaattttggatgaaacacaacatttagatattggactcaagcagaaacaatggctaatg
actgaggctttagtcaacaatcccaaaattgaagtaatagatgggaagtatgctttcaag
cccaagtacaacgtgagagataagaaggccctacttaggctcttagatcagcatgaccag
cgaggattaggaggaattcttttagaagacatagaagaagcactgcccaattcccagaaa
gctgtcaaggctttgggggaccagatactatttgtaaatcgtcccgataagaagaaaata
cttttcttcaatgataagagctgtcagttttctgtggatgaagaatttcagaaactgtgg
aggagtgtcactgtagattccatggacgaggagaaaattgaagaatatctgaagcgacag
ggtatttcttccatgcaggaatctggaccaaagaaagtggcccctattcagagaaggaaa
aagcctgcttcacagaaaaagcgacgctttaagactcataacgaacacttggctggagtg
ctgaaggattactctgacattacttccagcaaatag

KEGG   DISEASE: Trichothiodystrophy
Entry
H00866                      Disease                                
Name
Trichothiodystrophy
  Supergrp
Disorders of nucleotide excision repair [DS:H00403]
Description
Trichothiodystrophy (TTD) is a premature aging syndrome, with the hallmark feature of brittle hair and nails, ichthyosis, and progressive mental and physical retardation. Within photo-sensitive TTD, three TFIIH coding genes (ERCC2, ERCC3, and TTDA/GTF2H5) are implicated. Non-photosensitive trichothiodystrophy (TTDN) is characterized by short stature, intellectual impairment, sulfur-deficient brittle hair, and decreased male fertility but not cutaneous photosensitivity. Mutations in MPLKIP, RNF113A, and GTF2E2 have been reported.
Category
Skin disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 14 Diseases of the skin
  Genetic and developmental disorders affecting the skin
   EC21  Genetic defects of hair or hair growth
    H00866  Trichothiodystrophy
Pathway-based classification of diseases [BR:br08402]
 Replication and repair
  nt06502  Nucleotide excision repair
   H00866  Trichothiodystrophy
Pathway
hsa03022  Basal transcription factors
hsa03420  Nucleotide excision repair
Network
nt06502 Nucleotide excision repair
Gene
(TTD1) ERCC2 [HSA:2068] [KO:K10844]
(TTD2) ERCC3 [HSA:2071] [KO:K10843]
(TTD3) GTF2H5 [HSA:404672] [KO:K10845]
(TTD4) MPLKIP [HSA:136647] [KO:K24575]
(TTD5) RNF113A [HSA:7737] [KO:K13127]
(TTD6) GTF2E2 [HSA:2961] [KO:K03137]
(TTD7) TARS1 [HSA:6897] [KO:K01868]
(TTD8) AARS1 [HSA:16] [KO:K01872]
(TTD9) MARS1 [HSA:4141] [KO:K01874]
Other DBs
ICD-11: EC21.1
MeSH: D054463
OMIM: 601675 616390 616395 234050 300953 616943 618546 619691 619692
Reference
PMID:9195225 (ERCC2)
  Authors
Takayama K, Danks DM, Salazar EP, Cleaver JE, Weber CA
  Title
DNA repair characteristics and mutations in the ERCC2 DNA repair and transcription gene in a trichothiodystrophy patient.
  Journal
Reference
PMID:9012405 (ERCC3)
  Authors
Weeda G, Eveno E, Donker I, Vermeulen W, Chevallier-Lagente O, Taieb A, Stary A, Hoeijmakers JH, Mezzina M, Sarasin A
  Title
A mutation in the XPB/ERCC3 DNA repair transcription gene, associated with trichothiodystrophy.
  Journal
Am J Hum Genet 60:320-9 (1997)
Reference
PMID:15220921 (GTF2H5)
  Authors
Giglia-Mari G, Coin F, Ranish JA, Hoogstraten D, Theil A, Wijgers N, Jaspers NG, Raams A, Argentini M, van der Spek PJ, Botta E, Stefanini M, Egly JM, Aebersold R, Hoeijmakers JH, Vermeulen W
  Title
A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A.
  Journal
Nat Genet 36:714-9 (2004)
DOI:10.1038/ng1387
Reference
PMID:15645389 (MPLKIP)
  Authors
Nakabayashi K, Amann D, Ren Y, Saarialho-Kere U, Avidan N, Gentles S, MacDonald JR, Puffenberger EG, Christiano AM, Martinez-Mir A, Salas-Alanis JC, Rizzo R, Vamos E, Raams A, Les C, Seboun E, Jaspers NG, Beckmann JS, Jackson CE, Scherer SW
  Title
Identification of C7orf11 (TTDN1) gene mutations and genetic heterogeneity in nonphotosensitive trichothiodystrophy.
  Journal
Am J Hum Genet 76:510-6 (2005)
DOI:10.1086/428141
Reference
PMID:25612912 (RNF113A)
  Authors
Corbett MA, Dudding-Byth T, Crock PA, Botta E, Christie LM, Nardo T, Caligiuri G, Hobson L, Boyle J, Mansour A, Friend KL, Crawford J, Jackson G, Vandeleur L, Hackett A, Tarpey P, Stratton MR, Turner G, Gecz J, Field M
  Title
A novel X-linked trichothiodystrophy associated with a nonsense mutation in RNF113A.
  Journal
J Med Genet 52:269-74 (2015)
DOI:10.1136/jmedgenet-2014-102418
Reference
PMID:26996949 (GTF2E2)
  Authors
Kuschal C, Botta E, Orioli D, Digiovanna JJ, Seneca S, Keymolen K, Tamura D, Heller E, Khan SG, Caligiuri G, Lanzafame M, Nardo T, Ricotti R, Peverali FA, Stephens R, Zhao Y, Lehmann AR, Baranello L, Levens D, Kraemer KH, Stefanini M
  Title
GTF2E2 Mutations Destabilize the General Transcription Factor Complex TFIIE in Individuals with DNA Repair-Proficient Trichothiodystrophy.
  Journal
Am J Hum Genet 98:627-42 (2016)
DOI:10.1016/j.ajhg.2016.02.008
Reference
PMID:31374204 (TARS1)
  Authors
Theil AF, Botta E, Raams A, Smith DEC, Mendes MI, Caligiuri G, Giachetti S, Bione S, Carriero R, Liberi G, Zardoni L, Swagemakers SMA, Salomons GS, Sarasin A, Lehmann A, van der Spek PJ, Ogi T, Hoeijmakers JHJ, Vermeulen W, Orioli D
  Title
Bi-allelic TARS Mutations Are Associated with Brittle Hair Phenotype.
  Journal
Am J Hum Genet 105:434-440 (2019)
DOI:10.1016/j.ajhg.2019.06.017
Reference
PMID:33909043 (AARS1 MARS1)
  Authors
Botta E, Theil AF, Raams A, Caligiuri G, Giachetti S, Bione S, Accadia M, Lombardi A, Smith DEC, Mendes MI, Swagemakers SMA, van der Spek PJ, Salomons GS, Hoeijmakers JHJ, Yesodharan D, Nampoothiri S, Ogi T, Lehmann AR, Orioli D, Vermeulen W
  Title
Protein instability associated with AARS1 and MARS1 mutations causes trichothiodystrophy.
  Journal
Hum Mol Genet 30:1711-1720 (2021)
DOI:10.1093/hmg/ddab123
LinkDB

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