Homo sapiens (human): 55119
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Entry
55119 CDS
T01001
Symbol
PRPF38B, NET1
Name
(RefSeq) pre-mRNA processing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
hsa
Homo sapiens (human)
Pathway
hsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
55119 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsa03041
]
55119 (PRPF38B)
Spliceosome [BR:
hsa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
55119 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
55119 (PRPF38B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
55119
NCBI-ProteinID:
NP_060531
HGNC:
25512
Ensembl:
ENSG00000134186
UniProt:
Q5VTL8
LinkDB
All DBs
Position
1:108692310..108702928
Genome browser
AA seq
546 aa
AA seq
DB search
MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQGNVLPLWGNEKTMNLNP
MILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVG
TGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFES
FLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKI
KKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKE
RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKEN
ERGRRRDRDYDKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSK
KEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTD
SVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIEQESQEKQHK
NKDETV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaacagccccgcgctgacaggcaactcgcagccgcagcaccaggcggctgca
gctgcggctcagcaacagcagcagtgcggcggcggcggcgctaccaagccggcggtctcc
ggcaagcagggcaatgtgctcccgctctggggcaacgagaagaccatgaacctcaacccc
atgatcctgaccaacatcctgtcgtcgccttacttcaaagtacagctctacgagctcaag
acctaccacgaggtggtggacgagatctactttaaggtcacgcacgttgaaccatgggag
aaaggaagcaggaaaacagcgggccagacagggatgtgcggaggggttcgaggtgttgga
acaggaggaattgtttctacagcattttgcctgttatacaaattatttaccctgaagtta
actcgaaagcaagtgatgggtcttataacacacacagactctccatatattagagcgctt
ggatttatgtatataagatatacacagccccctacagatctgtgggactggtttgaatcc
ttccttgatgatgaagaggacctagatgtgaaggctggtggaggctgtgtaatgaccatt
ggagaaatgctacgatcttttctcacaaaactggagtggttttctaccttgtttccaaga
attccagttccagttcaaaagaatattgatcaacagattaaaacccgacctagaaaaatc
aagaaagatgggaaggaaggtgctgaggaaatagacagacatgttgaacgcagacgttca
aggtctccaaggagatctctgagtccacggaggtccccaagaaggtcaagaagtagaagt
catcatcgggagggccatgggtcttctagttttgacagagaattagaaagagagaaagaa
cgccagcgactagagcgtgaagccaaagaaagggagaaagaacggcgaagatcccgaagt
attgaccgggggttagaacgcaggcgcagcagaagtagggaaaggcatagaagtcgcagt
cgaagtcgtgataggaaaggggatagaagggacagggatcgagaaagagagaaagaaaat
gagagaggtagaagacgagatcgtgactatgataaggaaagaggaaatgaacgagaaaaa
gagagagagcgatcaagagaaaggtccaaggaacagagaagtaggggagaggtagaagag
aagaaacataaagaagacaaagatgataggcggcacagagatgacaaaagagattccaag
aaagagaaaaaacacagtagaagcagaagcagagaaaggaaacacagaagtaggagtcga
agtagaaatgcagggaaacgaagtagaagtagaagcaaagagaaatcaagtaaacataaa
aatgaaagtaaagaaaaatcaaataaacgaagtcgaagtggcagtcaaggaagaactgac
agtgttgaaaaatcaaaaaaacgggaacatagtcccagcaaagaaaaatctagaaagcgt
agtagaagcaaagaacgttcccacaaacgagatcacagtgatagtaaggaccagtcagac
aaacatgatcgtcgaaggagccaaagtatagaacaagagagccaagaaaaacagcataaa
aacaaagatgagactgtgtga
Homo sapiens (human): 84950
Help
Entry
84950 CDS
T01001
Symbol
PRPF38A, PRP38A, Prp38
Name
(RefSeq) pre-mRNA processing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
hsa
Homo sapiens (human)
Pathway
hsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
84950 (PRPF38A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsa03041
]
84950 (PRPF38A)
Spliceosome [BR:
hsa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
84950 (PRPF38A)
Complex C
U4/U6.U5 tri-SnRNP related factors
84950 (PRPF38A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
84950
NCBI-ProteinID:
NP_116253
OMIM:
617031
HGNC:
25930
Ensembl:
ENSG00000134748
UniProt:
Q8NAV1
Structure
PDB
PDBj
LinkDB
All DBs
Position
1:52404602..52420836
Genome browser
AA seq
312 aa
AA seq
DB search
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR
VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSRSPR
RRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERS
KKSHKKSRRGNE
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccgtacagtgaaggatgcgcacagcatccatggcaccaaccctcaatatctg
gtggagaagatcattcgaacgcgaatctatgagtccaagtactggaaagaggagtgcttt
ggacttacagctgaacttgtagtcgataaagccatggagttaaggtttgtgggtggcgtc
tatggtggcaacataaaaccaacaccctttctgtgtttaaccttgaagatgcttcaaatt
caacccgagaaggatatcattgtagagtttatcaaaaatgaagatttcaagtatgtccgc
atgctgggggcactttacatgaggctgacaggcactgcaattgattgctacaagtacttg
gaacctttgtacaatgactatcgaaaaatcaagagccagaaccgaaatggggagtttgaa
ttgatgcatgttgatgagtttattgatgaactattgcacagtgagagagtctgtgatatc
attctgccccgactacagaaacgctatgtattagaggaagctgagcaactggagcctcga
gttagtgctctggaagaggacatggatgatgtggagtccagtgaagaggaagaagaggag
gatgagaagttggaaagagtgccatcacctgatcaccgccggagaagctaccgagacttg
gacaagccccgtcgctctcccacactgcgctacaggaggagtaggagccggtctcccaga
aggcggagtcgatctcccaaaaggagaagcccctcccctcgccgagaaaggcatcggagc
aagagtccaagacgtcaccgcagcaggtcccgagatcggcggcacagatcccgttccaag
tccccaggtcatcaccgtagtcacagacacaggagccactcaaagtctcccgaaaggtct
aagaagagccacaagaagagccggagagggaatgagtaa
DBGET
integrated database retrieval system
