Homo sapiens (human): 56949
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Entry
56949 CDS
T01001
Symbol
XAB2, HCNP, HCRN, NTC90, SYF1
Name
(RefSeq) XPA binding protein 2
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hsa
Homo sapiens (human)
Pathway
hsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
56949 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsa03019
]
56949 (XAB2)
03041 Spliceosome [BR:
hsa03041
]
56949 (XAB2)
Messenger RNA biogenesis [BR:
hsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
56949 (XAB2)
Spliceosome [BR:
hsa03041
]
Complex B
Other components
Prp19-related factors
56949 (XAB2)
Complex C
56949 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_MalT
TPR_21
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
56949
NCBI-ProteinID:
NP_064581
OMIM:
610850
HGNC:
14089
Ensembl:
ENSG00000076924
UniProt:
Q9HCS7
Structure
PDB
PDBj
LinkDB
All DBs
Position
19:complement(7619525..7629545)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactctcgcggcccgagcggccggaccttgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccaattctctgtcaaatgctggcttcgc
tacatcgagttcaaacagggcgccccgaagcccaggctcaatcagctatacgagcgggca
ctcaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcgcgtcgggca
caggtgaagcatcgctgtgtgaccgaccctgcctatgaagatgtcaacaactgtcatgag
agggcctttgtgttcatgcacaagatgcctcgtctgtggctagattactgccagttcctc
atggaccaggggcgcgtcacacacacccgccgcaccttcgaccgtgccctccgggcactg
cccatcacgcagcactctcgaatttggcccctgtatctgcgcttcctgcgctcacaccca
ctgcctgagacagctgtgcgaggctatcggcgcttcctcaagctgagtcctgagagtgca
gaggagtacattgagtacctcaagtcaagtgaccggctggatgaggccgcccagcgcctg
gccaccgtggtgaacgacgagcgtttcgtgtctaaggccggcaagtccaactaccagctg
tggcacgagctgtgcgacctcatctcccagaatccggacaaggtacagtccctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgt
tctctcgccgactactacatccgcagcggccatttcgagaaggctcgggacgtgtacgag
gaggccatccggacagtgatgaccgtgcgggacttcacacaggtgtttgacagctacgcc
cagttcgaggagagcatgatcgctgcaaagatggagaccgcctcggagctggggcgcgag
gaggaggatgatgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcttgctgcgccaaaacccacaccacgtgcacgagtgg
cacaagcgtgtcgccctgcaccagggccgcccccgggagatcatcaacacctacacagag
gctgtgcagacggtggaccccttcaaggccacaggcaagccccacactctgtgggtggcg
tttgccaagttttatgaggacaacggacagctggacgatgcccgtgtcatcctggagaag
gccaccaaggtgaacttcaagcaggtggatgacctggcaagcgtgtggtgtcagtgcgga
gagctggagctccgacacgagaactacgatgaggccttgcggctgctgcgaaaggccacg
gcgctgcctgcccgccgggccgagtactttgatggttcagagcccgtgcagaaccgcgtg
tacaagtcactgaaggtctggtccatgctcgccgacctggaggagagcctcggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgtatcgcaacaccccagatc
gtcatcaactatgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaaattcattgcccgctatgggggccgcaagctggagcgggcacgggacctgttt
gaacaggctctggacggctgccccccaaaatatgccaagaccttgtacctgctgtacgca
cagctggaggaggagtggggcctggcccggcatgccatggccgtgtacgagcgtgccacc
agggccgtggagcccgcccagcagtatgacatgttcaacatctacatcaagcgggcggcc
gagatctatggggtcacccacacccgcggcatctaccagaaggccattgaggtgctgtcg
gacgagcacgcgcgtgagatgtgcctgcggtttgcagacatggagtgcaagctcggggag
attgaccgcgcccgggccatctacagcttctgctcccagatctgtgacccccggacgacc
ggcgcgttctggcagacgtggaaggactttgaggtccggcatggcaatgaggacaccatc
aaggaaatgctgcgtatccggcgcagcgtgcaggccacgtacaacacgcaggtcaacttc
atggcctcgcagatgctcaaggtctcgggcagtgccacgggcaccgtgtctgacctggcc
cctgggcagagtggcatggacgacatgaagctgctggaacagcgggcagagcagctggcg
gctgaggcggagcgtgaccagcccttgcgcgcccagagcaagatcctgttcgtgaggagt
gacgcctcccgggaggagctggcagagctggcacagcaggtcaaccccgaggagatccag
ctgggcgaggacgaggacgaggacgagatggacctggagcccaacgaggttcggctggag
cagcagagcgtgccagccgcagtgtttgggagcctgaaggaagactga
DBGET
integrated database retrieval system
