KEGG   Homo sapiens (human): 7508
Entry
7508              CDS       T01001                                 
Symbol
XPC, RAD4, XP3, XPCC, p125
Name
(RefSeq) XPC complex subunit, DNA damage recognition and repair factor
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
hsa  Homo sapiens (human)
Pathway
hsa03420  Nucleotide excision repair
Network
nt06502  Nucleotide excision repair
  Element
N01425  Global genome NER
Disease
H00403  Disorders of nucleotide excision repair
H01428  Xeroderma pigmentosum
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    7508 (XPC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hsa03400]
    7508 (XPC)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      7508 (XPC)
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 zf-B_box
Other DBs
NCBI-GeneID: 7508
NCBI-ProteinID: NP_004619
OMIM: 613208
HGNC: 12816
Ensembl: ENSG00000154767
UniProt: Q01831 X5DRB1
Structure
LinkDB
Position
3:complement(14145147..14178601)
AA seq 940 aa
MARKRAAGGEPRGRELRSQKSKAKSKARREEEEEDAFEDEKPPKKSLLSKVSQGKRKRGC
SHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFPSDLKKAHHLKRGATMNE
DSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPVEIEIETPEQAKTRERSE
KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNNICSQPDLHAIGLSIIPAR
FTRVLPRDVDTYYLSNLVKWFIGTFTVNAELSASEQDNLQTTLERRFAIYSARDDEELVH
IFLLILRALQLLTRLVLSLQPIPLKSATAKGKKPSKERLTADPGGSSETSSQVLENHTKP
KTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKATQRRPHGR
ERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPGPPKQRKAPAPQRTKAGS
KSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQWLEVFCEQEE
KWVCVDCVHGVVGQPLTCYKYATKPMTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDA
EWWAETLRPYQSPFMDREKKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIY
PETAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSNRARKARLA
EPQLREENDLGLFGYWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLH
RVARKLDIDCVQAITGFDFHGGYSHPVTDGYIVCEEFKDVLLTAWENEQAVIERKEKEKK
EKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTDAGGGLSSDEEEGTSSQAEAARIL
AASWPQNREDEEKQKLKGGPKKTKREKKAAASHLFPFEQL
NT seq 2823 nt   +upstreamnt  +downstreamnt
atggctcggaaacgcgcggccggcggggagccgcggggacgcgaactgcgcagccagaaa
tccaaggccaagagcaaggcccggcgtgaggaggaggaggaggatgcctttgaagatgag
aaacccccaaagaagagccttctctccaaagtttcacaaggaaagaggaaaagaggctgc
agtcatcctgggggttcagcagatggtccagcaaaaaagaaagtggccaaggtgactgtt
aaatctgaaaacctcaaggttataaaggatgaagccctcagcgatggggatgacctcagg
gactttccaagtgacctcaagaaggcacaccatctgaagagaggggctaccatgaatgaa
gacagcaatgaagaagaggaagaaagtgaaaatgattgggaagaggttgaagaacttagt
gagcctgtgctgggtgacgtgagagaaagtacagccttctctcgatctcttctgcctgtg
aagccagtggagatagagattgaaacgccagagcaggcgaagacaagagaaagaagtgaa
aagataaaactggagtttgagacatatcttcggagggcgatgaaacgtttcaataaaggg
gtccatgaggacacacacaaggttcaccttctctgcctgctagcaaatggcttctatcga
aataacatctgcagccagccagatctgcatgctattggcctgtccatcatcccagcccgc
tttaccagagtgctgcctcgagatgtggacacctactacctctcaaacctggtgaagtgg
ttcattggaacatttacagttaatgcagaactttcagccagtgaacaagataacctgcag
actacattggaaaggagatttgctatttactctgctcgagatgatgaggaattggtccat
atattcttactgattctccgggctctgcagctcttgacccggctggtattgtctctacag
ccaattcctctgaagtcagcaacagcaaagggaaagaaaccttccaaggaaagattgact
gcggatccaggaggctcctcagaaacttccagccaagttctagaaaaccacaccaaacca
aagaccagcaaaggaaccaaacaagaggaaacctttgctaagggcacctgcaggccaagt
gccaaagggaagaggaacaagggaggcagaaagaaacggagcaagccctcctccagcgag
gaagatgagggcccaggagacaagcaggagaaggcaacccagcgacgtccgcatggccgg
gagcggcgggtggcctccagggtgtcttataaagaggagagtgggagtgatgaggctggc
agcggctctgattttgagctctccagtggagaagcctctgatccctctgatgaggattcc
gaacctggccctccaaagcagaggaaagcccccgctcctcagaggacaaaggctgggtcc
aagagtgcctccaggacccatcgtgggagccatcgtaaggacccaagcttgccagcggca
tcctcaagctcttcaagcagtaaaagaggcaagaaaatgtgcagcgatggtgagaaggca
gaaaaaagaagcatagctggtatagaccagtggctagaggtgttctgtgagcaggaggaa
aagtgggtatgtgtagactgtgtgcacggtgtggtgggccagcctctgacctgttacaag
tacgccaccaagcccatgacctatgtggtgggcattgacagtgacggctgggtccgagat
gtcacacagaggtacgacccagtctggatgacagtgacccgcaagtgccgggttgatgct
gagtggtgggccgagaccttgagaccataccagagcccatttatggacagggagaagaaa
gaagacttggagtttcaggctaaacacatggaccagcctttgcccactgccattggctta
tataagaaccaccctctgtatgccctgaagcggcatctcctgaaatatgaggccatctat
cccgagacagctgccatccttgggtattgtcgtggagaagcggtctactccagggattgt
gtgcacactctgcattccagggacacgtggctgaagaaagcaagagtggtgaggcttgga
gaagtaccctacaagatggtgaaaggcttttctaaccgtgctcggaaagcccgacttgct
gagccccagctgcgggaagaaaatgacctgggcctgtttggctactggcagacagaggag
tatcagcccccagtggccgtggacgggaaggtgccccggaacgagtttgggaatgtgtac
ctcttcctgcccagcatgatgcctattggctgtgtccagctgaacctgcccaatctacac
cgcgtggcccgcaagctggacatcgactgtgtccaggccatcactggctttgatttccat
ggcggctactcccatcccgtgactgatggatacatcgtctgcgaggaattcaaagacgtg
ctcctgactgcctgggaaaatgagcaggcagtcattgaaaggaaggagaaggagaaaaag
gagaagcgggctctagggaactggaagttgctggccaaaggtctgctcatcagggagagg
ctgaagcgtcgctacgggcccaagagtgaggcagcagctccccacacagatgcaggaggt
ggactctcttctgatgaagaggaggggaccagctctcaagcagaagcggccaggatactg
gctgcctcctggcctcaaaaccgagaagatgaagaaaagcagaagctgaagggtgggccc
aagaagaccaaaagggaaaagaaagcagcagcttcccacctgttcccatttgagcagctg
tga

KEGG   Homo sapiens (human): 5886
Entry
5886              CDS       T01001                                 
Symbol
RAD23A, HHR23A, HR23A
Name
(RefSeq) RAD23 homolog A, nucleotide excision repair protein
  KO
K10839  UV excision repair protein RAD23
Organism
hsa  Homo sapiens (human)
Pathway
hsa03420  Nucleotide excision repair
hsa04141  Protein processing in endoplasmic reticulum
Network
nt06502  Nucleotide excision repair
  Element
N01425  Global genome NER
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    5886 (RAD23A)
  09124 Replication and repair
   03420 Nucleotide excision repair
    5886 (RAD23A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:hsa03051]
    5886 (RAD23A)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    5886 (RAD23A)
Proteasome [BR:hsa03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    5886 (RAD23A)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      5886 (RAD23A)
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD UBA_3 Rad60-SLD_2 Crinkler Ubiquitin_2
Other DBs
NCBI-GeneID: 5886
NCBI-ProteinID: NP_005044
OMIM: 600061
HGNC: 9812
Ensembl: ENSG00000179262
UniProt: P54725
Structure
LinkDB
Position
19:12945862..12953642
AA seq 363 aa
MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQ
FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE
VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
DDE
NT seq 1092 nt   +upstreamnt  +downstreamnt
atggccgtcaccatcacgctcaaaacgctgcagcagcagaccttcaagatccgcatggag
cctgacgagacggtgaaggtgctaaaggagaagatagaagctgagaagggtcgtgatgcc
ttccccgtggctggacagaaactcatctatgccggcaagatcttgagtgacgatgtccct
atcagggactatcgcatcgatgagaagaactttgtggtcgtcatggtgaccaagaccaaa
gccggccagggtacctcagcacccccagaggcctcacccacagctgccccagagtcctct
acatccttcccgcctgcccccacctcaggcatgtcccatcccccacctgccgccagagag
gacaagagcccatcagaggaatccgcccccacgacgtccccagagtctgtgtcaggctct
gttccctcttcaggtagcagcgggcgagaggaagacgcggcctccacgctagtgacgggc
tctgagtatgagacgatgctgacggagatcatgtccatgggctatgagcgagagcgggtc
gtggccgccctgagagccagctacaacaacccccaccgagccgtggagtatctgctcacg
ggaattcctgggagccccgagccggaacacggttctgtccaggagagccaggtatcggag
cagccggccacggaagcagcaggagagaaccccctggagttcctgcgggaccagccccag
ttccagaacatgcggcaggtgattcagcagaaccctgcgctgctgcccgccctgctccag
cagctgggccaggagaaccctcagcttttacagcaaatcagccggcaccaggagcagttc
atccagatgctgaacgagccccctggggagctggcggacatctcagatgtggagggggag
gtgggcgccataggagaggaggccccgcagatgaactacatccaggtgacgccgcaggag
aaagaagctatagagaggttgaaggccctgggcttcccagagagcctggtcatccaggcc
tatttcgcgtgtgaaaaaaatgagaacttggctgccaacttcctcctgagtcagaacttt
gatgacgagtga

KEGG   Homo sapiens (human): 5887
Entry
5887              CDS       T01001                                 
Symbol
RAD23B, HHR23B, HR23B, P58
Name
(RefSeq) RAD23 homolog B, nucleotide excision repair protein
  KO
K10839  UV excision repair protein RAD23
Organism
hsa  Homo sapiens (human)
Pathway
hsa03420  Nucleotide excision repair
hsa04141  Protein processing in endoplasmic reticulum
Network
nt06502  Nucleotide excision repair
  Element
N01425  Global genome NER
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    5887 (RAD23B)
  09124 Replication and repair
   03420 Nucleotide excision repair
    5887 (RAD23B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:hsa03051]
    5887 (RAD23B)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    5887 (RAD23B)
Proteasome [BR:hsa03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    5887 (RAD23B)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      5887 (RAD23B)
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD Rad60-SLD_2 Crinkler UBA_3 Dsc3_N UBA_2 DUF1421 CUE Ubiquitin_2
Other DBs
NCBI-GeneID: 5887
NCBI-ProteinID: NP_002865
OMIM: 600062
HGNC: 9813
Ensembl: ENSG00000119318
UniProt: P54727
Structure
LinkDB
Position
9:107283279..107332194
AA seq 409 aa
MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
NT seq 1230 nt   +upstreamnt  +downstreamnt
atgcaggtcaccctgaagaccctccagcagcagaccttcaagatagacattgaccccgag
gagacggtgaaagcactgaaagagaagattgaatctgaaaaggggaaagatgcctttcca
gtagcaggtcaaaaattaatttatgcaggcaaaatcctcaatgatgatactgctctcaaa
gaatataaaattgatgagaaaaactttgtggtggttatggtgaccaaacccaaagcagtg
tccacaccagcaccagctacaactcagcagtcagctcctgccagcactacagcagttact
tcctccaccaccacaactgtggctcaggctccaacccctgtccctgccttggcccccact
tccacacctgcatccatcactccagcatcagcgacagcatcttctgaacctgcacctgct
agtgcagctaaacaagagaagcctgcagaaaagccagcagagacaccagtggctactagc
ccaacagcaactgacagtacatcgggtgattcttctcggtcaaacctttttgaagatgca
acgagtgcacttgtgacgggtcagtcttacgagaatatggtaactgagatcatgtcaatg
ggctatgaacgagagcaagtaattgcagccctgagagccagtttcaacaaccctgacaga
gcagtggagtatcttttaatgggaatccctggagatagagaaagtcaggctgtggttgac
ccccctcaagcagctagtactggggctcctcagtcttcagcagtggctgcagctgcagca
actacgacagcaacaactacaacaacaagttctggaggacatccccttgaatttttacgg
aatcagcctcagtttcaacagatgagacaaattattcagcagaatccttccttgcttcca
gcgttactacagcagataggtcgagagaatcctcaattacttcagcaaattagccaacac
caggagcattttattcagatgttaaatgaaccagttcaagaagctggtggtcaaggagga
ggaggtggaggtggcagtggaggaattgcagaagctggaagtggtcatatgaactacatt
caagtaacacctcaggaaaaagaagctatagaaaggttaaaggcattaggatttcctgaa
ggacttgtgatacaagcgtattttgcttgtgagaagaatgagaatttggctgccaatttt
cttctacagcagaactttgatgaagattga

KEGG   Homo sapiens (human): 1069
Entry
1069              CDS       T01001                                 
Symbol
CETN2, CALT, CEN2
Name
(RefSeq) centrin 2
  KO
K10840  centrin-2
Organism
hsa  Homo sapiens (human)
Pathway
hsa03420  Nucleotide excision repair
Network
nt06502  Nucleotide excision repair
  Element
N01425  Global genome NER
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    1069 (CETN2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    1069 (CETN2)
   03036 Chromosome and associated proteins [BR:hsa03036]
    1069 (CETN2)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    1069 (CETN2)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX-2 complex
     1069 (CETN2)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Centrosome formation proteins
   Centriole proteins
    1069 (CETN2)
   Centrosome duplication proteins
    Centriole replication proteins
     1069 (CETN2)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      1069 (CETN2)
SSDB
Motif
Pfam: EF-hand_7 EF-hand_1 EF-hand_6 EF-hand_8 EF-hand_9 AIF-1 EF-hand_5 EF-hand_4 EF-hand_14 SurA_N_3 7TMR-HDED Dockerin_1 SUB1_ProdP9 Asp-B-Hydro_N RTP SurA_N_2 Nmad4 Maestro_HEAT DUF4601 MJ1010-like_2nd LETM1_RBD
Other DBs
NCBI-GeneID: 1069
NCBI-ProteinID: NP_004335
OMIM: 300006
HGNC: 1867
Ensembl: ENSG00000147400
UniProt: P41208
Structure
LinkDB
Position
X:complement(152826994..152830757)
AA seq 172 aa
MASNFKKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRAL
GFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGK
ISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKKTSLY
NT seq 519 nt   +upstreamnt  +downstreamnt
atggcctccaactttaagaaggcaaacatggcatcaagttctcagcgaaaaagaatgagc
cctaagcctgagcttactgaagagcaaaagcaggagatccgggaagcttttgatcttttc
gatgcggatggaactggcaccatagatgttaaagaactgaaggtggcaatgagggccctg
ggctttgaacccaagaaagaagaaattaagaaaatgataagtgaaattgataaggaaggg
acaggaaaaatgaactttggtgactttttaactgtgatgacccagaaaatgtctgagaaa
gatactaaagaagaaatcctgaaagctttcaagctctttgatgatgatgaaactgggaag
atttcgttcaaaaatctgaaacgcgtggccaaggagttgggtgagaacctgactgatgag
gagctgcaggaaatgattgatgaagctgatcgagatggagatggagaggtcagtgagcaa
gagttcctgcgcatcatgaaaaagaccagcctctattaa

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