Homo sapiens (human): 8189
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Entry
8189 CDS
T01001
Symbol
SYMPK, Pta1, SPK, SYM
Name
(RefSeq) symplekin scaffold protein
KO
K06100
symplekin
Organism
hsa
Homo sapiens (human)
Pathway
hsa03015
mRNA surveillance pathway
hsa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8189 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
8189 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsa03021
]
8189 (SYMPK)
03019 Messenger RNA biogenesis [BR:
hsa03019
]
8189 (SYMPK)
Transcription machinery [BR:
hsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8189 (SYMPK)
Messenger RNA biogenesis [BR:
hsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
8189 (SYMPK)
U7-dependent histone pre-mRNA processing factors
8189 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
8189
NCBI-ProteinID:
NP_004810
OMIM:
602388
HGNC:
22935
Ensembl:
ENSG00000125755
UniProt:
Q92797
Structure
PDB
PDBj
LinkDB
All DBs
Position
19:complement(45815410..45863147)
Genome browser
AA seq
1274 aa
AA seq
DB search
MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFNSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPEAKEAPAGPLEEDDLEPLTLAPAPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGVGAPSSSSPSPSPSARPGPPPSEEAMDFREEGPECET
PGIFISMDDDSGLTEAALLDSSLEGPLPKETAAGGLTLKEERSPQTLAPVGEDAMKTPSP
AAEDAREPEAKGNS
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggcagtggagacagcgtcacccgtcggagcgtggcatcacagtttttcact
caagaggaggggccgggcatcgatggcatgaccacctcagagagggtggtggatcttctg
aaccaggcggcgctgatcaccaatgactcaaagatcacagtgctcaaacaggtccaggag
ctgatcatcaacaaagaccccacactactggacaacttcctggatgagatcatcgcattc
caagcagacaagtcaatcgaagtgcgaaaatttgtcatcggcttcatcgaggaggcatgc
aagcgagacattgagttgctgctgaaactcattgcaaacctcaacatgctcttgagggac
gagaatgtgaacgtggtgaagaaggctatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtaaagtcacgggtcattagcgagctacaggaggcctgctgggacatg
gtatctgccatggcgggggacatcatcctgctattggactctgacaatgacggcatccgc
acccacgccatcaagtttgtggagggcctcattgtcaccctgtcaccccgcatggctgac
tcagagataccccgacgccaggagcatgatatcagcctggaccgcatccctcgtgaccac
ccctacatccagtacaacgtgctatgggaagagggcaaggcagccttggagcagctgctt
aagttcatggtgcaccctgccatctcctccatcaacctgaccacagcgctgggctccctt
gccaatatcgcccgccagagacccatgttcatgtctgaggtgatccaggcctatgaaact
ctgcatgccaacctgcccccgacgctggccaaatcgcaggtgagcagtgtgcgtaagaat
ctgaagctgcacctgttgagtgtgctgaagcacccggcttccttggagttccaggcccag
atcaccaccctgctggtggacctgggcacacctcaggccgagatcgcccgcaacatgccg
agcagcaaggacacccgcaagcggccccgcgatgactcggactccacactcaagaagatg
aagctggagcccaacctgggggaggacgatgaggacaaagacttggagccaggcccgtcg
gggacctcgaaggcctcagcgcagatctccggccagtcagacacggacatcacagctgag
ttcctgcagcctctgctgacgcctgataatgtggctaatctggtcctcatcagcatggtg
tacctacccgaggccatgccagcctccttccaggccatctacacccccgtggagtcagca
ggcacggaagcccagatcaagcacctggctcggctcatggccacacagatgacagctgcc
ggactgggaccaggtgtagagcagaccaaacagtgcaaggaggagcccaaggaggagaag
gtggtgaagacagagagcgtcctgatcaagcggcgcctgtcagcccagggccaagccatc
tcggtggtgggttccctgagctccatgtcccccctggaggaagaggcaccgcaggccaag
aggaggccagagcccattatccctgtcactcagccccggctggcaggcgctggtgggcgc
aagaaaattttccgtctcagcgacgtgctgaagccccttaccgatgcccaggtggaagcc
atgaagctgggcgctgtgaagcggatcctgcgggctgagaaggctgtggcctgcagcggg
gcagcccaggtccgcataaagatcctggccagcctggtgacacagttcaactcgggcctg
aaggcggaggtcctgtccttcatcctggaggatgtgcgggcccgcctggacctggccttc
gcctggctctaccaggagtacaacgcctacctggccgcaggtgcctcgggctccctggac
aagtatgaggactgcctcatccgcctgttgtctggcctgcaggagaaaccagaccagaag
gatgggatcttcaccaaggttgtgctggaggcgccactcatcacagagagtgccctggag
gtggtccgcaagtactgcgaggatgagagtcgcacctatctgggcatgtccacacttcga
gacctgatcttcaagcgcccgtcccgccagttccagtacctgcatgtcctcctcgacctc
agctcccatgagaaggacaaggtgcgctcccaggccctgctgttcatcaaacgcatgtat
gagaaggagcagctgcgggagtatgtggagaaatttgccctcaactacctgcagctcctg
gtgcaccccaacccaccgtctgtgctgtttggagctgacaaggacacagaggtggcagca
ccctggacggaggagacagtgaagcagtgtctgtacctctacctggccctcctgcctcag
aaccacaagctgatccacgaactggcggccgtgtacactgaagccatcgccgacatcaag
cggacggtgctgagggtcattgagcagccgatccgaggaatgggcatgaactccccggag
ctgctcctgctggtggaaaattgtcccaagggagcagagacactggtcacgagatgtctg
cacagcctcacagacaaagtcccaccctccccagagctggtgaagcgggtccgggatctc
taccacaagcgactgccagacgtccgcttcctcatcccggtgctcaatgggctggagaag
aaagaggtgatccaggccctgcctaaactcatcaaactcaaccccatcgtggtgaaggaa
gtcttcaaccgcctgctgggcacccagcatggtgagggaaactcagccttgtccccgctg
aaccctggagagctcctgatcgcattacacaacattgactccgtgaagtgcgacatgaaa
tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacgtcagaggtg
ctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtgtggaagtaccccaaggtgtgggagggcttcatcaag
tgctgccagcgcacaaagccccagagcttccaggtcatcctgcagctgccgccccagcag
ctgggagccgtctttgacaagtgcccagagctccgggagcccctgctggcccatgtccgc
tccttcaccccccaccagcaagctcacatccctaactccatcatgaccatcttggaggcc
agcggcaagcaggagccagaggccaaggaggcgcctgcggggcccttggaggaggatgat
ctggagcccctgaccttggccccggccccagcaccccggccccctcaggacctcatcggc
ctgcgactggcccaggagaaggccttaaagcggcagctggaggaggaacagaagctgaag
ccgggaggagtgggagccccctcctcttcctccccctctccctctccgtcggcccggcca
ggcccgcccccgtctgaggaagccatggatttccgggaggaggggcctgagtgcgagacc
ccgggcatcttcatcagcatggatgacgactcggggctgaccgaggccgcgctgttggac
tctagtctcgagggccccctacccaaggagacggcagcgggcgggctgaccttgaaggag
gagcggagcccccagaccctcgcacctgttggagaagatgctatgaagactcccagcccg
gctgccgaggacgccagggaacccgaggccaaggggaacagctga
DBGET
integrated database retrieval system
