Homo sapiens (human): 85301
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Entry
85301 CDS
T01001
Symbol
COL27A1, STLS
Name
(RefSeq) collagen type XXVII alpha 1 chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
hsa
Homo sapiens (human)
Pathway
hsa04820
Cytoskeleton in muscle cells
hsa04974
Protein digestion and absorption
Disease
H02300
Steel syndrome
Brite
KEGG Orthology (KO) [BR:
hsa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
85301 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
85301 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hsa00536
]
85301 (COL27A1)
Glycosaminoglycan binding proteins [BR:
hsa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
85301 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
85301
NCBI-ProteinID:
NP_116277
OMIM:
608461
HGNC:
22986
Ensembl:
ENSG00000196739
UniProt:
Q8IZC6
LinkDB
All DBs
Position
9:114154098..114312511
Genome browser
AA seq
1860 aa
AA seq
DB search
MGAGSARGARGTAAAAAARGGGFLFSWILVSFACHLASTQGAPEDVDILQRLGLSWTKAG
SPAPPGVIPFQSGFIFTQRARLQAPTGTVIPAALGTELALVLSLCSHRVNHAFLFAVRSQ
KRKLQLGLQFLPGKTVVHLGSRRSVAFDLDMHDGRWHHLALELRGRTVTLVTACGQRRVP
VLLPFHRDPALDPGGSFLFGKMNPHAVQFEGALCQFSIYPVTQVAHNYCTHLRKQCGQAD
TYQSPLGPLFSQDSGRPFTFQSDLALLGLENLTTATPALGSLPAGRGPRGTVAPATPTKP
QRTSPTNPHQHMAVGGPAQTPLLPAKLSASNALDPMLPASVGGSTRTPRPAAAQPSQKIT
ATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSR
PAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHK
PPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSE
ASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSS
SPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPY
GNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHP
GEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVP
GKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMK
GLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSI
GFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLE
GQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPP
GVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSR
GLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPI
GPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPD
GLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAK
GYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPL
GPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQ
QGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGI
AGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQ
LGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGP
RGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGG
PIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPL
GTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKV
EFAISRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGG
QFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgggatcggcgcggggggcccgaggcacagcggcggcggcggcggcgcgcggg
ggggggtttctcttctcctggatcttagtctcgtttgcctgtcacctggcctccacccaa
ggagctcctgaagatgtggacatcctccagcggctgggcctcagctggacgaaggccggg
agccctgcacccccgggagtcattcctttccagtcgggcttcatctttacgcagcgggcc
cggctccaggctcccacgggcaccgtcattcctgccgccttgggcacagagctggcactg
gtgctgagcctctgctcccaccgggtgaaccatgccttcctcttcgctgtccgcagccag
aaacgcaagctgcagctgggcctgcagttcctccccggcaagacggtcgtccacctcggg
tcccggcgctcagtggccttcgacctcgacatgcacgacgggcgctggcaccacctggcc
ctcgagctccgaggccgcacagtcactctggtgactgcctgcgggcagcgccgggtgcct
gtcctgctgcctttccacagggaccctgcactcgaccctgggggctccttcctctttggg
aagatgaacccgcatgcagtccagtttgaaggtgctctctgccagttcagtatctaccct
gtgacgcaggtcgctcacaattactgtacccacctgaggaagcagtgtggacaggctgac
acgtaccagtccccactgggacctctcttctcccaagactctggcagaccttttaccttc
cagtccgacctcgccctgctaggcctggagaacttgaccactgccacaccagccctgggg
tcactgccagcaggcaggggacccagggggactgtggcacccgccacgcccaccaagccc
caaaggactagccccacaaaccctcaccagcatatggcggtgggaggcccagcccaaacc
ccgctgctacctgccaagctgtcagccagtaacgcacttgatcccatgctcccagcctct
gttggcggctctaccagaacgcctcgccctgcggccgctcaaccatcacagaagatcaca
gccaccaaaatccccaaaagcctccctaccaagccttcggccccttctacttcaattgtg
cccatcaaaagcccccatcctacccagaaaacagctccatcttcatttacaaagtcagcc
ctacccactcagaagcaagtgccacctacttcccgtccagttcctgccagagtctcccgt
cccgcagagaagcccatccagaggaacccgggaatgcccaggcccccaccgcccagcacc
cggcccctacctcctaccaccagctcctctaaaaaacccattcccacactagctcggact
gaggccaagataaccagccatgccagtaagccggcctctgcccgcaccagcacccacaaa
cctcccccatttactgctttatcctcatctcctgcccctactcctggttctaccaggagt
actcggccaccagccacgatggtacctccaacttcgggcaccagcactcccagaacagca
cctgccgtccccactcctggctcagctcccactggaagcaagaagcccattggatcggaa
gcctcaaagaaagccggacccaagagcagcccccggaagcctgtccccctcagacctggg
aaggcagccagggatgtccccttgagcgatctgacaaccaggcctagccccagacagccc
cagcccagtcagcagaccaccccggccctggtattggccccggcgcaattcctgtcctcc
agcccccggcccacgagcagtggctattcgatcttccacctggcaggatctacgcctttc
cctctgctgatggggcctccgggacccaagggagactgtggcttgccgggtccccctggg
ctacctgggctacctggaatccctggtgcacgtgggcctcggggtcctcctgggccttat
ggaaatccaggtctccccggccctcctggagccaaaggacagaaaggggacccagggctc
tcaccaggaaaggcccacgatggggcaaagggtgacatgggcttgcctgggctctccggg
aatccaggacctccgggacgaaagggacacaagggctatcctggaccggcagggcacccc
ggagaacaggggcagccaggacctgagggcagcccaggggccaaaggttaccctggcagg
caggggttacctggaccggtaggagatcccggccccaaaggcagcaggggctacattggg
ctcccagggctcttcggcctgccagggtctgatggagaacgaggcctgcctggcgttcct
ggcaagaggggcaagatgggtatgccggggtttcctggagtctttggggaaagaggccct
cctggactggatggaaatcctggagaactgggcctgccaggcccccctggagtccccggc
ctcattggtgacttaggagtgttgggtccgattggctacccgggacccaagggcatgaag
ggactgatgggcagcgtgggggagcccggactgaaaggtgataagggtgaacaaggggtt
ccaggtgtgtcaggagatcccggattccaaggagacaaggggagccaggggttgccaggg
ttccccggtgcacgggggaagccagggcctctgggcaaagtcggagacaaaggatccatt
gggtttcccgggccccctggacccgagggattcccaggagacatcggcccccctggcgac
aatggcccagaaggcatgaagggtaagcctggagcccgaggcctgccgggaccccgtggg
cagctggggcccgagggagatgagggacccatggggccgccaggggcccctggcttggag
ggtcagcctggcaggaaggggtttcctgggaggcccggcctggatggcgtgaagggggaa
ccaggggatcctggtcggccggggcctgtgggagagcagggatttatgggattcattggt
ctggtcggggagccaggaatcgtgggagaaaagggtgatcgtggcatgatgggaccccca
ggcgtgcctggacccaaggggtcgatgggtcatcctggaatgccaggtggtatggggacc
cctggagagcctggaccccagggtcctccaggatctcgaggcccaccaggcatgagggga
gcaaagggacgtcggggcccccgaggaccggacggaccagctggggagcaagggtccagg
ggcctgaagggccctccaggaccccagggcagaccgggccggcctggacagcagggtgtg
gctggtgagcgaggccacttgggctcgagaggctttcctggcatcccgggtccctcaggc
cccccaggcaccaagggcctcccaggagaaccgggccctcagggaccccaggggccaatt
gggcctccaggagagatgggacccaaggggccgcctggtgcagtgggagaaccgggcctt
cctggggaagccgggatgaagggtgaccttggacccctgggcactcctggggagcagggc
ctcattgggcaacggggagagccaggccttgagggtgacagtggccccatgggacctgat
gggctgaagggggacaggggagacccagggcctgatggagaacatggcgagaaaggccag
gaagggctgatgggtgaggacgggccccccggcccccctggcgtcactggtgtccggggt
cctgaaggaaaatcagggaagcaaggcgagaagggccgcactggagccaagggtgccaag
ggctatcaaggacagctgggtgagatgggcgtccctggagaccctggaccccctggcact
ccaggccctaaagggtcccggggcagcctgggaccaacgggtgctccgggacgcatgggg
gcccaaggagaaccgggactggctggttatgatggacacaaaggcattgtgggacccctt
ggacctcctggaccaaaaggcgaaaagggggagcagggcgaggacggcaaggctgagggg
ccccctgggccacctggagatcggggccctgtgggtgatcgaggagaccgcggggaaccg
ggagaccctgggtaccctggacaggagggtgtgcaaggcctccgtggaaagccaggccag
cagggccaacccgggcatccgggaccccgggggtggccgggacccaaaggatcgaaaggc
gcagagggaccaaagggaaagcaaggcaaggcaggggccccaggccggaggggggtccag
ggcctgcaggggctgccagggccccggggcgtggtggggagacagggcctcgagggcatc
gctggaccagatgggcttcctggcagggacgggcaagcaggacagcagggggagcaggga
gacgatggggaccctggccccatgggccctgctgggaagagaggaaatccaggtgtggcc
ggcttacctggagcacagggacccccaggattcaagggtgagagtgggttacccggacag
ctgggtccccctggcaagcgaggaacagagggcagaacggggctccctggaaaccagggg
gagcctgggtccaaaggccagccgggcgactctggcgagatgggcttcccaggaatggca
ggtctcttcggacccaagggcccgcctggagacattggcttcaaaggcatccagggccct
cgggggccacctggcttgatgggaaaggaaggcatcgtcgggcccctcggaatcctggga
ccttcgggactcccgggtccgaagggtgacaaaggcagccgtggggactggggattgcaa
ggtccgaggggtcctcccggccccagagggcggcccggccccccgggtcctccagggggt
cctatccaattgcaacaagatgatcttggggcagctttccagacgtggatggacaccagt
ggagcactcaggccagagagttacagctatccagaccggctggtgctggaccagggagga
gagatctttaaaaccttacactacctcagcaacctcatccagagcattaagacgcccctg
ggcaccaaagagaaccccgcccgggtctgcagggacctcatggactgtgagcagaagatg
gtggatggtacctactgggtggatccaaaccttggctgctcctctgacaccatcgaggtc
tcctgcaacttcactcatggtggacagacgtgtctcaagcccatcacggcctccaaggtc
gagtttgccatcagccgggtccagatgaatttcctgcacctgctaagctccgaggtgacc
cagcacatcaccatccactgccttaacatgaccgtgtggcaggagggcactgggcagacc
ccagccaagcaggccgtacgcttccgggcctggaatggacagatttttgaagctgggggt
cagttccggcccgaggtgtccatggatggctgcaaggtccaagatggccgctggcatcag
acactcttcaccttccggacccaagacccccaacagctgcccatcatcagtgtggacaac
ctccctcctgcctcatcagggaagcagtaccgcctggaagttggacctgcgtgcttcctc
tga
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