Haloterrigena salifodinae: JMJ58_10105
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Entry
JMJ58_10105 CDS
T07070
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsal
Haloterrigena salifodinae
Pathway
hsal03030
DNA replication
hsal03410
Base excision repair
hsal03420
Nucleotide excision repair
hsal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JMJ58_10105 (ligA)
03410 Base excision repair
JMJ58_10105 (ligA)
03420 Nucleotide excision repair
JMJ58_10105 (ligA)
03430 Mismatch repair
JMJ58_10105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsal03032
]
JMJ58_10105 (ligA)
03400 DNA repair and recombination proteins [BR:
hsal03400
]
JMJ58_10105 (ligA)
Enzymes [BR:
hsal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JMJ58_10105 (ligA)
DNA replication proteins [BR:
hsal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JMJ58_10105 (ligA)
DNA repair and recombination proteins [BR:
hsal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JMJ58_10105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JMJ58_10105 (ligA)
MMR (mismatch excision repair)
DNA ligase
JMJ58_10105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JMJ58_10105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
RNA_ligase
5_3_exonuc
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QRV17193
UniProt:
A0A8T8E6F3
LinkDB
All DBs
Position
2061716..2063794
Genome browser
AA seq
692 aa
AA seq
DB search
MSVADEDAENPYLRDPPTDFASVEELSEDEAREQVELLREAVREHDRRYYVESEPLIADR
TYDALFARLRDLEDAFGLEHPDSPTRSVGGEPIEEFDTVEHVAPMLSIDQSGEEEDVREF
ADRVQREVGDVDYVCEPKFDGVSMEFVYEDGRLERAATRGDGREGDDVTRNARTIGSVPQ
KLHGDYPDFLAVRGEVYMPKDAFQKHNRERIERGEEPFANPRNATAGTIRQLDPAVVADR
PLEVFFFDVLEASDLEDSHSAELERFPEWGLRVTEHVKLVDDIDEAIDYRDRMLEARDDL
NYEIDGTVIKVDARDAREELGRTARHDRYAFAYKFPARAEVTPIVDVAVQVGRTGRLTPV
ALLEPVDVGGVTVSRASLHNPEEIAEKNVGIGDTVRVQRAGDVIPYVEEVVEKDGEGHYE
LPDHCPICDSAVERDGPMAFCTGGLACDAQLRRSIEYYAGDDGLDLEGIGEKSVRQLVDA
GLLESVADLYELDREDLTALEGWGETSAENVLDEVEASREPPLADFLSALGIPHVGPTTA
RELAREFGTFDAFRETAEAEPERLEDVPDVGETVAKQLHEFFTSEANAAAVGDLLEHVSP
QESDLESGGDELESLTFVFTGSLEGVTRGEAQETVEAHGANATGSVSGNTDYLVVGENPG
QTKRDDAEVNDVPIVDEDEFRDLLAEYGIDLE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcgccgacgaggacgcggagaacccgtacctccgggatccgccgaccgacttc
gcgtcggtcgaggagctctcggaggacgaggcccgcgaacaggtcgaactgctccgggag
gccgtccgcgaacacgaccgccggtactacgtcgagagcgaaccgctgatcgccgaccgg
acctacgacgcgctgttcgcccgtctgcgggacctcgaggacgccttcgggctcgaacac
cccgacagccccacgcgaagcgtcggcggcgagcccatcgaggagttcgacacggtcgag
cacgtcgcgccgatgctctcgatcgaccagagcggcgaggaggaagacgtccgcgagttc
gcggatcgagtacagcgagaggtcggtgacgtcgactacgtctgcgaacccaagttcgac
ggcgtctcaatggagttcgtctacgaggacggccgcctcgagcgcgcggcgacccgcggg
gacggccgcgagggcgacgacgtgacgcgcaacgcgcgcacgatcggctccgttccccag
aagctccacggcgactaccccgatttcctcgccgttcggggcgaggtctatatgcccaag
gatgcctttcagaagcacaaccgcgagcgcatcgagcgcggcgaggaacccttcgccaac
ccgcgcaacgccaccgcggggacgatccgccagctcgatcccgccgtcgtcgccgaccgt
cccctcgaggtgttcttcttcgacgtgctcgaggccagcgacctcgaggacagccacagc
gccgaactcgagcgctttcccgagtgggggctgcgggtcactgaacacgtcaaactcgtg
gacgacatcgacgaggcgatcgactatcgcgaccggatgctcgaggcccgcgacgacctg
aactacgagatcgacggcaccgtcatcaaggtcgacgcccgcgacgcccgcgaggagttg
ggccggacggcgcgccacgaccgctacgcgttcgcctacaagttccccgcccgcgccgag
gtgacgcccatcgtcgacgtggcggtgcaggtgggacgtaccggtcggctgacgccggtc
gccctcttggaaccggtggacgtcggcggcgtgacggtctcgcgggcgagcctgcacaac
cccgaggagatcgccgagaagaacgtcgggatcggcgacacggtccgcgtccagcgggcc
ggcgacgtcatcccatacgtcgaagaggtcgtcgagaaggacggcgagggtcactacgag
ctgcccgaccactgtcccatctgcgacagcgccgtcgagcgcgacggtccgatggccttc
tgtaccggcggcctcgcctgcgacgcccagctccggcggtcgatcgagtactacgccggc
gacgacgggctcgacctcgaggggatcggcgagaagagcgtccgccaactggtcgacgcc
ggcctcctcgagtccgtcgcggacctctacgaactcgaccgcgaggacctcacggccctc
gagggctggggcgagacgagcgccgagaacgtcctcgacgaagtcgaggccagccgcgag
ccgccactcgccgacttcctctcggcgctcggcatccctcacgtcgggccgacgacggcc
cgcgagctcgcccgcgagttcggcacgttcgacgcgttccgcgagaccgccgaggccgag
cccgaacgcctcgaggacgtgccggacgtcggcgagaccgtcgccaaacagctccacgag
ttcttcaccagcgaggccaacgccgcggcggtcggcgacttgctcgagcacgtctcgccc
caggagtcggacctcgagagcggcggcgacgaactcgagagcctcaccttcgtcttcacg
ggctcgctcgagggagtcacccgcggcgaggcccaggagaccgtcgaagcccacggcgcc
aacgcgacgggcagcgtctcggggaacacagactacctcgtcgtcggcgagaatccggga
cagaccaaacgcgacgacgccgaagtgaacgacgtcccaattgtcgacgaggacgagttt
cgggatctactggcggagtacgggatcgacctcgagtga
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