Hymenobacter sublimis: MWH26_07750
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Entry
MWH26_07750 CDS
T09379
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsb
Hymenobacter sublimis
Pathway
hsb03030
DNA replication
hsb03410
Base excision repair
hsb03420
Nucleotide excision repair
hsb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MWH26_07750 (ligA)
03410 Base excision repair
MWH26_07750 (ligA)
03420 Nucleotide excision repair
MWH26_07750 (ligA)
03430 Mismatch repair
MWH26_07750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsb03032
]
MWH26_07750 (ligA)
03400 DNA repair and recombination proteins [BR:
hsb03400
]
MWH26_07750 (ligA)
Enzymes [BR:
hsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MWH26_07750 (ligA)
DNA replication proteins [BR:
hsb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MWH26_07750 (ligA)
DNA repair and recombination proteins [BR:
hsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MWH26_07750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MWH26_07750 (ligA)
MMR (mismatch excision repair)
DNA ligase
MWH26_07750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MWH26_07750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UPL50786
UniProt:
A0ABY4JGA3
LinkDB
All DBs
Position
complement(1836220..1838382)
Genome browser
AA seq
720 aa
AA seq
DB search
MPADDNIQHQITALTERLHHLNYQYYQRDISEVPDQEFDQMLAQLAQLEKDYPQFAHPNS
PTQRVGGTITKQFPTAEHRYPMLSLGNTYSEADLREFDERVRRGLEGAAVQYVCELKFDG
VAMSLTYQDGQLTQGVTRGDGTRGDVVTSNVRTIRNLPLHLRPAGPPQPADFEVRGEIFM
PLPVFAELNAEREANGEALLANPRNAASGALKLQDSALVAARKLRFFAYSFLMPGRSMFP
THSASLEALHAWGLPVSDTWRVCGTIEQVLDFVHEWDKKRFTLPVATDGIVIKVDDFRQQ
ELLGFTAKSPRWAIAYKYPAEAARTRLHTIQYQVGRTGAVTPVALLDPVPLAGTVVKRAS
VHNANQIAALDLRLGDLVFVEKGGEIIPKITGVDLASRPANAVPIIYPTECPACGTPLIR
PEGEAHFRCPNERACPPQLKAKLEHFVSRKALDIDGLGAETVGRFFDLRLVSNAASLYDL
PAKAAELAQLERMGEKSVQRLLTGLEQSKQIPFDRVLFGLGIRYVGETVAEKLAQHYRTM
DALAAASATELAAVPEVGGVIAESVAAWFQEPENRQLIEGLRAAGLQLALTGEAPQPQSD
RLAGLTFVLSGVFEQHSREALQHLIQQNGGKITGSISKKLSYLVAGDKMGPAKREKATEL
KVPIITEDELLAMLPTSFDAEDAVLDQMLGDSTAAAPTPAAATATGQTPSAGAGEQGSLF
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgacgacaacattcagcaccagataacggccctcaccgagcgcctgcaccac
cttaactaccaatattaccagcgcgacatctcggaagtgcccgaccaggagttcgaccag
atgctggcccagctggcccaactggaaaaggactacccccagtttgcccaccccaactcg
cctactcagcgcgtgggcggcaccatcacgaagcaatttcctacggctgagcaccgctac
cccatgcttagcctgggcaatacctactccgaggctgacctgcgagagtttgatgagcgg
gtgcgccgcgggctggaaggtgccgccgtgcagtacgtgtgtgagctgaagtttgacggg
gtagccatgagcctaacctaccaggacggccaactcacgcagggtgtcacgcgcggcgac
ggtacccgcggcgacgtggtaaccagcaacgtgcgcaccattcgcaacctgcccctgcac
ctgcgccccgccggcccgccccaacccgctgactttgaggtacgcggcgaaatattcatg
cccctgccggtttttgccgagttgaatgctgagcgggaagccaacggggaagccctgctg
gccaatccgcgcaacgccgccagcggggccctcaagctccaggactcggcgctggtggca
gcccgcaagctgcggtttttcgcctattccttcctgatgccgggccggagcatgttccct
acccacagcgcgtcgctggaagccctgcacgcctggggcctacccgtatccgacacctgg
cgggtgtgcggcaccatagagcaagtgctggatttcgtgcacgagtgggataagaagcgg
tttacgcttccggttgctaccgatggcattgttatcaaggtcgacgatttccgccagcag
gagctactgggcttcacggccaaaagcccccgctgggccattgcctacaagtacccggcc
gaagccgcccgtacgcgcctgcacaccattcagtaccaggtgggccgcacgggcgccgta
acgcccgtggccctgctcgaccccgtgcccctggctggcaccgtggtcaagcgcgcctcc
gtgcacaacgccaaccagattgcggccctcgacttgcgtctcggcgacttggttttcgtg
gagaaaggcggtgaaatcatccccaaaatcacgggcgttgatttggcttcccgccccgcc
aatgccgtgcccatcatctaccccaccgaatgcccggcctgcggcacgcccctgatccgg
cccgagggtgaggcccacttccgctgccccaatgagcgggcctgccccccccaactcaag
gccaagctagagcacttcgtttcgcgcaaggccctggacattgatgggctgggcgccgaa
accgtggggcggttctttgatctgcggttggtttcgaatgcggccagcctctacgacctg
cccgccaaagctgccgagctggcccaattagagcgcatgggtgaaaaatcggtgcagcgc
ctgctcacgggcctggagcagagcaagcaaattccgttcgaccgggtactgtttggcctg
ggcatccgctacgtgggcgagacggtagccgaaaagctcgctcagcactaccgcaccatg
gatgccctggccgcagcctcagccacggagctggcggccgtgccggaggtaggcggcgtt
attgccgagtcggtggcggcgtggtttcaggagccggagaatcgccagctgattgagggc
ctgcgggcggcgggcctgcaactggccctgaccggcgaggctccgcagccccagagcgac
cggctggcgggcctcacctttgtcctttcgggcgtgtttgagcagcacagccgggaggcg
ttgcagcacctgattcagcagaacgggggcaagattaccggtagcatcagcaagaagctc
agctacttagtagccggcgacaaaatgggccccgccaagcgcgagaaagccaccgaactg
aaagtacccatcatcaccgaggacgagttgctggccatgctgcctaccagcttcgacgcg
gaagatgccgtgctagaccaaatgctgggcgattctacagcagcggctcctacccctgcg
gcagccaccgcaactggccagaccccatctgctggggcgggtgagcaaggcagcttgttc
taa
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