Acetivibrio saccincola: HVS_07340
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Entry
HVS_07340 CDS
T05223
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsc
Acetivibrio saccincola
Pathway
hsc03030
DNA replication
hsc03410
Base excision repair
hsc03420
Nucleotide excision repair
hsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HVS_07340 (ligA)
03410 Base excision repair
HVS_07340 (ligA)
03420 Nucleotide excision repair
HVS_07340 (ligA)
03430 Mismatch repair
HVS_07340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsc03032
]
HVS_07340 (ligA)
03400 DNA repair and recombination proteins [BR:
hsc03400
]
HVS_07340 (ligA)
Enzymes [BR:
hsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HVS_07340 (ligA)
DNA replication proteins [BR:
hsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HVS_07340 (ligA)
DNA repair and recombination proteins [BR:
hsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HVS_07340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HVS_07340 (ligA)
MMR (mismatch excision repair)
DNA ligase
HVS_07340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HVS_07340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
RNA_ligase
HHH
DUF4164
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AUG57385
UniProt:
A0A2K9EDU9
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All DBs
Position
1625759..1627750
Genome browser
AA seq
663 aa
AA seq
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MKIEERIQKLRDIINYHNHKYYVEDSPEISDYEYDKLYRELEELESQRPDLITPDSPTQR
VGGEPLSGFEKVQHNVHMQSLSDAFSNEELYAFDRRVREVVGNNVEYVVEKKIDGLSVAL
RYENGVFVRGATRGDGFVGEDVTSNLKTIRSIPLVLKEKLPLLEVRGEVFISKENFEKIN
EQQKKDGQMLFANPRNAAAGSLRQLDPKIASLRKLDIFIFNVQDVQGKTFKTHSESLEFM
KEAGLKISPGYKVCKNIKEVIEEIDRIGKEREKLPFEIDGAVVKVNSLEQRNLLGSTSKV
PKWAIAYKYPAEIKETVIKDIWVNVGRTGVLTPNALLEPVQIAGTTVSRATLHNMDYIEE
RDIRIGDWVKIRKAGDIIPEIVESIPEKRSGNERPFIMPEKCPECGADVVREEGEVAHRC
TGIECPAQLYRSIIHFASRDAMNIEGLGPAIIEVLLKKGFIKGIADLYYLKDYKDELLKL
DRMGEKSVENLLNSIERTKDNNIDRLINGFGIRHIGLRAAQLLSENFESIDEIKNASFED
FIKIPEFGEKMAESLVIFFKQEQTEDTINKLRSAGVNLKSRSRAKHSDNRFEGLTFVLTG
TLESYKRNEAAEIIRSFGGKVSGSVSKKTDYVLAGEEAGSKLTKARELGIKIIDENEFKK
MIL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaatagaagagagaatacaaaaattaagggatataatcaattatcacaaccataag
tattatgttgaggattcacctgaaataagcgattatgaatatgataaattgtacagggaa
ctggaagaacttgaaagccaaagaccggatttaattacgccggattcgcctacccaaagg
gtggggggggagcctttgtcgggatttgaaaaagtccagcacaatgtacatatgcaaagc
ctttcagatgcctttagtaatgaagaattatatgcctttgacagaagggtcagggaagtt
gtaggaaataacgtggaatacgttgttgagaaaaaaatagacggtctttctgttgcttta
agatatgaaaacggggtgtttgtaagaggggctacccggggtgatggttttgtgggagaa
gatgtaacatcaaatttaaaaaccataagatcaattcccttggtgttaaaggagaaatta
cctttattggaagtcaggggagaggtttttatatccaaagaaaattttgaaaaaataaat
gaacagcaaaaaaaggatgggcagatgctttttgccaaccccagaaatgccgctgcaggg
tcacttaggcaacttgaccctaagattgcaagtcttaggaaattggatatatttattttt
aatgtacaggatgtacaaggaaaaacctttaaaactcacagtgaatctttagaatttatg
aaagaagcagggcttaaaatcagtcccgggtataaggtttgcaaaaacataaaagaggtt
atagaggaaatagacaggattggtaaagaaagagagaaattgccttttgaaattgacggg
gctgtggtaaaagtaaattctttagaacagagaaatcttttaggaagtacttcaaaggta
cccaaatgggcaatagcctataaatatcctgcagaaataaaagaaactgtaattaaggat
atatgggttaatgtgggaaggacaggtgttcttactcccaatgctcttttagaacctgtg
caaattgcaggtacaactgtaagcagggcgactcttcacaatatggactatattgaagaa
agggatattcgtattggagactgggtgaagataagaaaagcaggggatataattcctgag
attgtagaatccatacctgagaaaagaagtgggaatgaacgaccttttattatgccggag
aaatgtccggaatgcggggcagatgtggtaagagaagaaggagaagttgcccacaggtgt
acaggtatagagtgtcctgcccagctttatagaagcattatacactttgcttcaagggat
gcaatgaatattgagggtttaggacctgctataattgaagtgctgctaaaaaaaggcttt
attaagggaatagcggatttatactatttaaaagattataaggatgagcttttaaaattg
gacagaatgggagaaaaatctgtagaaaatcttttaaattcaattgaaagaactaaggat
aacaatattgacaggcttataaacggttttggaataaggcatataggtcttagggctgcc
cagcttttaagtgaaaattttgaatctatagatgaaattaaaaatgcttcttttgaagac
tttataaagatacctgaatttggtgaaaagatggcagaaagccttgttattttctttaag
caggagcaaactgaggatacaataaataagctaaggagtgcaggggtaaatttaaagagc
aggagcagggcaaagcatagtgataacaggtttgaaggccttacctttgttttaacgggt
actttagaaagctataaaaggaatgaggcagcagaaataataaggagttttggcggaaaa
gtttccggcagcgtttcaaaaaagacggattatgttttagcaggagaagaagcaggcagc
aaacttacaaaggcaagggaacttggaataaaaataattgatgaaaatgaatttaaaaaa
atgattttatga
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