Herbinix luporum: SD1D_1789
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Entry
SD1D_1789 CDS
T04072
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsd
Herbinix luporum
Pathway
hsd03030
DNA replication
hsd03410
Base excision repair
hsd03420
Nucleotide excision repair
hsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SD1D_1789 (ligA)
03410 Base excision repair
SD1D_1789 (ligA)
03420 Nucleotide excision repair
SD1D_1789 (ligA)
03430 Mismatch repair
SD1D_1789 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsd03032
]
SD1D_1789 (ligA)
03400 DNA repair and recombination proteins [BR:
hsd03400
]
SD1D_1789 (ligA)
Enzymes [BR:
hsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SD1D_1789 (ligA)
DNA replication proteins [BR:
hsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SD1D_1789 (ligA)
DNA repair and recombination proteins [BR:
hsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SD1D_1789 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD1D_1789 (ligA)
MMR (mismatch excision repair)
DNA ligase
SD1D_1789 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SD1D_1789 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH_5
Nlig-Ia
RNA_ligase
Lipocalin_7
DNA_ligase_A_M
Zn_Ribbon_TF
PTP-NADK
Motif
Other DBs
NCBI-ProteinID:
CUH93334
UniProt:
A0A0K8J7A2
LinkDB
All DBs
Position
I:complement(1919565..1921568)
Genome browser
AA seq
667 aa
AA seq
DB search
MDIRQEIENLRELIRYHNDRYYNQDDPEISDYEYDQLTIKLRKLEEEYPEYKTADSPTQI
VGGSAKREAGILVKHNIPMLSLQDVFSKEEVFSFVEKILKERQDSRFVVEKKIDGLSVSL
RYEDGRFVQGVTRGDGINYGEDVTENIREIKDVIMELKDPVPYLEIRGEVYMKNEDFEAV
NDKLEAEGKKRFANPRNCAAGTLRQLDPQVVRERKLSLFAFNIQDVRGISFENHSESLSW
LRNQGFKVIEDYKICKTAEEVWEAIKEIGENRGSLAYGIDGAVVKVDNLADREYFGATSK
VPRWAVAYKYPPEEKETVLKDIRLSVGRTGRITPTAIFDPILLCGTTVERATLHNQDRID
ELDVRIGDTIIVRKAGEIIPEVVTVVKDKRPEDTVPYKIPFVCPSCGGPAARDENSADIR
CSNLNCPAQLTQHILNFVGRNAMDIKGFGEAYVEALIKEGYVKDIADIYYLDRYRDEMIE
KGLIGKEKNTDKLLKAIEDSKKNDIDRLITGFGIRNIGRQAAYSLMKHFKSIHRLKEASY
EELLEVKDLGDISSRAVIEFFSNPANIKILSRLEQAGVNFEWEEDTLAANNNLSGLTFVI
TGTLPTMGRSEMEELIKKHGGKVSGSVSKKTSFVVAGENAGSKLVKAEQLGIKVLSEEEI
LAMINQD
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatattagacaggaaattgaaaatttaagagaacttataagatatcataatgataga
tattataaccaggatgaccctgaaatttctgactacgaatatgatcagttaaccataaaa
ttaagaaagcttgaagaggagtatccggaatataaaactgcagattcccccacacagatt
gtgggaggtagtgccaagagggaagcaggaatcttggttaagcacaatatacctatgtta
agcttacaggatgtattttcaaaggaagaagtatttagctttgttgaaaagattctaaaa
gaaagacaagacagtagatttgtagttgaaaaaaagattgacggactatcggtttcccta
aggtatgaggatggacgttttgtacagggggttactaggggcgacggtattaattatggt
gaggatgttactgagaatataagagaaatcaaagatgttataatggagcttaaagaccct
gttccctaccttgagattaggggagaagtctatatgaaaaatgaggattttgaagctgtc
aatgataagctagaagctgagggaaagaaaaggtttgccaatccaagaaactgtgcggca
ggaactttaaggcaactagacccacaggtggtaagggagagaaagctttctctttttgca
tttaatatacaggatgtacggggaatttcttttgaaaaccattctgaaagtttaagttgg
cttaggaatcaggggtttaaagttatagaagattataaaatatgcaagacagcagaagaa
gtatgggaggccattaaagagattggagaaaacagaggaagtcttgcctatggtatagat
ggtgcagtagtaaaggttgataatttggctgacagggagtattttggggccacatcaaag
gtacctagatgggcagtagcatataagtatcctccggaggaaaaagagacagttctaaaa
gacattagactttcagtaggaaggactggccgtattacccctactgccatttttgatcct
atcctcctatgcggaactactgtggagcgggctacacttcataaccaagacagaatagat
gagttagatgtaagaataggggatactataatcgttagaaaggccggagagattatcccg
gaagtggtaacggtagtaaaagataaacggcctgaagatacagtaccctataagatacct
tttgtatgtccatcctgtggtggccctgcagctagggatgaaaattcagccgatataaga
tgcagcaatttaaactgtccggcacagcttacccagcatatcttaaattttgtcggaaga
aatgccatggatattaagggttttggtgaggcctatgtggaggctcttataaaagaaggg
tatgtaaaggatattgctgatatttactatcttgacagataccgggatgagatgatagaa
aaaggtttaataggaaaggaaaagaatacagataagctcttaaaggctattgaagatagt
aagaagaatgatatagatagattaataaccggatttggtatccgtaatataggaaggcag
gcagcttattccttaatgaagcattttaagtcaatccacagattaaaagaagccagctat
gaggaactgcttgaagttaaggatttgggggatataagctctagggcagtgattgaattc
ttttcaaatcctgctaatattaagattttatctaggcttgagcaggcaggtgttaatttt
gaatgggaagaagatactttggctgcaaataataacctttcaggtttaacatttgtaata
acgggaactttgcctaccatgggaagatccgagatggaagaattaataaagaaacatggg
ggcaaggtatccggcagtgtttctaagaaaacaagctttgtagtagccggggagaatgcc
ggaagcaaattagttaaggcagaacagttaggaattaaagtactttctgaagaagaaatt
ttagctatgattaatcaggattag
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