Herbaspirillum seropedicae SmR1: Hsero_1357
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Entry
Hsero_1357 CDS
T01268
Name
(GenBank) efflux transporter, RND family, MFP subunit protein
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse01501
beta-Lactam resistance
hse01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Hsero_1357
01503 Cationic antimicrobial peptide (CAMP) resistance
Hsero_1357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hse03036
]
Hsero_1357
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hse02000
]
Hsero_1357
01504 Antimicrobial resistance genes [BR:
hse01504
]
Hsero_1357
Chromosome and associated proteins [BR:
hse03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
Hsero_1357
Transporters [BR:
hse02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
Hsero_1357
Antimicrobial resistance genes [BR:
hse01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
Hsero_1357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-barrel_RND
BSH_RND
HH_MFP_RND
RND-MFP_C
BSH_CzcB
YknX_C
BSH_CusB
Beta-barrel_RND_2
HH_CzcB
HH_YBHG
HH_AAEA_pHBA
HH_EMRA
CzcB_C
Motif
Other DBs
NCBI-ProteinID:
ADJ62873
UniProt:
D8IP53
LinkDB
All DBs
Position
1545436..1546638
Genome browser
AA seq
400 aa
AA seq
DB search
MRTPPIPKPVAALTALAILSVLSACGKPPGGAPPAAGTPVLGVVTVHAQPVELHTELPGR
TSPYQIADVRPQVNGIIKARSFREGSDVKAGQVLYQINPASYQAAYDSSVAALAKAEASV
RTARLKASRYKELVAIKAVSQQDYDDAVASLGEAEADVGSARANVQTSRINLDYARLDAP
ISGRIGKSSVTPGALVTANQTTALTTIQQLDPIYVDVTQSSTTWLNLKEALANGQLEKSG
NGAKVRLVLENGRTYAQEGTLQFSDVTVNQDTGAITLRAIFPNPKTDLLPGMYVRAVLQE
GVRQQGLLVPQQAVSRDGAGKPVAFVVNAQGVVEQRALVTDRAIGDQWLVSSGLKEGDQL
VVDGQQRASAGAKVKVVPWTPKASLASVANTAASAAAGAH
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacacctcccattcccaagcctgtcgccgcgctgactgcgctggccatcctcagc
gtgctcagcgcttgcggcaagccgcctggcggtgcgccgcctgccgctggcacgccggtg
ctgggcgtggtgacggtgcatgcgcagccggtggaattgcacaccgagttgccgggccgt
acctcgccctaccagatcgccgacgtgcgcccgcaggtcaatggcatcatcaaggcgcgc
agtttccgtgagggcagtgatgtcaaggcggggcaggtgctgtaccagatcaatccggcc
agctaccaggccgcttatgacagcagcgtagcggccctggccaaggccgaggccagcgtc
aggacggcccgcctgaaggccagccgctacaaggagctggtcgccatcaaggcggtcagc
cagcaggattacgatgatgccgtggcctccctgggcgaggcggaggccgatgtcgggtcg
gcccgcgccaatgtgcagaccagtcgcatcaatctcgattacgccaggctcgacgcgccc
atttccggtcgcatcggcaagtccagcgtgacgccgggcgcgctggtgacggccaaccag
accacggcgctgaccaccatccagcagctcgatcccatctatgtggacgtgacccagtcc
agcaccacctggctcaacctgaaggaggccctggccaatggccagctggagaagtcgggc
aatggcgccaaggtcaggctggtcctggaaaacggtcgtacctatgcgcaggaaggaacc
ctgcaattctctgatgtgacggtcaaccaggacaccggcgcgatcaccctgcgcgcgatc
ttccccaatcccaagaccgacctgcttccgggcatgtatgtgcgtgcggtgttgcaggag
ggcgtgcgccagcagggcctgctggtgccgcaacaggcggtcagtcgcgatggcgcgggc
aagccggtggccttcgtggtcaatgcccagggcgtggtggagcagcgtgcgctggtgacg
gaccgcgccattggcgaccaatggctggtcagcagtggcctcaaggaaggggatcagctg
gtggtcgatggccagcagcgcgccagtgcgggggccaaggtgaaggtggtgccgtggacg
cccaaggccagcctcgccagtgtggccaacaccgctgccagcgctgccgctggcgcgcat
tga
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