Herbaspirillum seropedicae SmR1: Hsero_1620
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Entry
Hsero_1620 CDS
T01268
Symbol
nth
Name
(GenBank) endonuclease III protein
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hsero_1620 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_1620 (nth)
Enzymes [BR:
hse01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Hsero_1620 (nth)
DNA repair and recombination proteins [BR:
hse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Hsero_1620 (nth)
Prokaryotic type
Hsero_1620 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Ogg-HhH
Motif
Other DBs
NCBI-ProteinID:
ADJ63133
UniProt:
D8IQM2
LinkDB
All DBs
Position
complement(1845024..1845674)
Genome browser
AA seq
216 aa
AA seq
DB search
MNPTKRREIFERLRQANPTPTTELEYTTPFELLIAVLLSAQATDVSVNKATRKLYPVANT
PEAIYRMGVDQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRK
TANVVLNTAFGHPTIAVDTHIFRVSNRTGLAPGKDVDEVERKLIKFVAPEFRQDAHHWLI
LHGRYTCIARKPQCWNCIIADLCEFKQKTPLPSKGV
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccaccaaacgccgcgagatcttcgagcgcctgcgccaggccaatcccaccccc
accaccgagctggaatacaccacgcccttcgagctgctcattgccgtgctgctctcggcg
caggccaccgatgtctcggtcaacaaggccacgcgcaagctctacccggtggccaacacg
cccgaggcgatctaccgcatgggcgtggaccagctcatgccctacatccagaccattggc
ctgtaccgcaccaaggccaagaatgtcatcgagacctgccgcatcctgatcgaagaacac
ggcggccaagtgccggagtcgcgcgaggcgctcgaagcgctgccgggcgtggggcgcaag
acggccaatgtggtcttgaataccgcctttggccatcccaccatcgcggtcgatacgcat
atcttccgcgtgtccaaccgcacggggctggcgccgggcaaggatgtggacgaggtcgag
cgcaagctcatcaagttcgtcgcgcccgaattccgccaggatgcccatcactggctgatc
ctgcatggccgctatacctgcatcgcgcgcaagccgcaatgctggaactgcatcattgcc
gacctctgcgaattcaagcagaagaccccgctgccgagcaagggcgtctga
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