Herbaspirillum seropedicae SmR1: Hsero_2167
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Entry
Hsero_2167 CDS
T01268
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II) protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse03030
DNA replication
hse03410
Base excision repair
hse03420
Nucleotide excision repair
hse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hsero_2167 (lig)
03410 Base excision repair
Hsero_2167 (lig)
03420 Nucleotide excision repair
Hsero_2167 (lig)
03430 Mismatch repair
Hsero_2167 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hse03032
]
Hsero_2167 (lig)
03400 DNA repair and recombination proteins [BR:
hse03400
]
Hsero_2167 (lig)
Enzymes [BR:
hse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Hsero_2167 (lig)
DNA replication proteins [BR:
hse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Hsero_2167 (lig)
DNA repair and recombination proteins [BR:
hse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Hsero_2167 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hsero_2167 (lig)
MMR (mismatch excision repair)
DNA ligase
Hsero_2167 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Hsero_2167 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
DUF4874
Zn_ribbon_NUD
DUF7340
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ADJ63666
UniProt:
D8IU04
LinkDB
All DBs
Position
2436813..2438879
Genome browser
AA seq
688 aa
AA seq
DB search
MPADLFSAGRPPQGAPDWLVRAFALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALE
TAHPELLTPDSPTQRVGAGPLPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETLQ
EVRYATELKFDGLAISLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQ
LLDVRGEVLMYKDDFARLNQRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYG
IGVLEGADMPSSHSALLDWYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDG
VVYKVDRLDQQKQLGFVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPV
FVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPA
ACPVCGSPIVRAEDEAVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDR
KVVNTPADLYRLGLSALAELDRMAEKSAQNVLDALQKSKSTTLARFIYALGIRHVGEATA
KELARHFGGLDKILAASEAQLLEVADVGPVVATSIRSFFDDALNVELVEQLRAVGVHWPE
SAGVEAAAKHLAGKTFVLTGTLPNLSRDEASQLIEAAGGKVTGSVSKKTTYVVAGAEAGS
KLAKAEELGIAILDEDGLKALCAEPVAD
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagacttgttttccgccggacggcccccgcaaggggcgccggactggctggtg
cgcgccttcgcgctgcgcgccgacctgaatcgccacaactacagctactacgtgctggac
cagcccagcattccggatgccgaatacgaccggctgttccaggaattgcaggcgctggaa
accgctcatcccgagctgctcaccccggactcgccgacccagcgcgtgggcgccggccct
ttgccgcagttcgagccggtccggcacgacattcccatgctctcgctgggcaatggtttc
tctgacgacgatatcgaagccttcgacaagcgcgtgcgcgatggcctggaaaccctgcag
gaagtgcgctacgccaccgagctgaagttcgacggcctggccatcagcctgcgctatgaa
aacggcgtgctggtgcaagccgccacgcgcggcgacggcaccaccggtgagaacgtcacg
gccaatatccgcacggtacgcgccatcccgctgcgcctgcatggcgaggccatcccgcag
ctgctcgatgtgcgtggcgaagtgctgatgtacaaggacgatttcgcgcgcctgaaccag
cgccagcgcgacgccggccagaaggagttcgccaacccccgcaatgccgctgccggcagc
ctgcgccaactggattcgcgcatcacggcgcagcgcacgctgcgcttctttgcctatggc
atcggcgtgctggaaggggccgacatgccgtcttcgcactcggctttgctggactggtac
cagcaactgggcttgcccgtctgcaaggagcgcgccgtggtcacgggcgcgaccggcttg
ctcgaattcttccgtggcatcggcgccaagcgcgagagcctgccctacgagatcgacggc
gtggtctacaaggtggaccggctggaccagcaaaagcaattgggcttcgtctcgcgcgcg
ccgcgctttgcgctggcgcacaagttcccggcccaggaagccctgaccgtggtgcaggac
atcgaggtgcaggtgggccgtacgggtgcgatcaccccggtggcgcgcttgaatccagtc
ttcgtgggcggggtcaccgtcaccaacgccaccttgcacaatgaagacgaggtgcgccgc
aaggacatccagatcggcgataccgtcatcgtgcggcgcgccggtgacgtcattcccgag
gtggtggcctatgtgccggagaagcgtccggccgatgcccgcgccttcgtcatgccggcg
gcttgcccggtctgcggctcgcccatcgtgcgcgccgaggatgaggcggtagcgcgctgt
tcgggcggctggctgaagtgctcggcccaacgcaagggcggattgcagcattttgcttca
cgtcgggccatggatattgaaggcctgggtgaacaactggtcgagcaactagtcgacagg
aaggtggtcaatacaccggctgacctgtatcgcctgggcttgtcggccctggccgaactg
gaccgcatggccgagaagtcggcacagaacgtgcttgatgccttgcagaagtccaagtcc
accacgctggcccgtttcatctatgcgctgggcatccggcacgtcggcgaggcgaccgcc
aaggaactggcgcggcactttggcggcctcgacaagatcctggcggcaagtgaagcgcag
ttgctggaagtggcggacgtgggcccggtggtggccacatcgattcgcagcttcttcgac
gatgccctcaatgtcgagctggtcgagcagctgcgcgcagtgggcgtacactggccggaa
agcgccggtgtggaggcggcggccaagcacctggctggcaagaccttcgtgctcaccggc
accttgcccaacctgtcgcgcgatgaggcgtcccagctcatcgaggcggccggcggcaag
gtcacaggttcggtatccaagaagaccacctatgtggtcgcaggcgccgaggccggcagc
aagctggccaaggcggaagagctgggcatcgccatcctggacgaggatgggctcaaggcc
ctgtgcgccgagccggtggcggactag
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