Herbaspirillum seropedicae SmR1: Hsero_4349
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Entry
Hsero_4349 CDS
T01268
Symbol
metH
Name
(GenBank) methionine synthase I, cobalamin-binding domain protein
KO
K00548
5-methyltetrahydrofolate--homocysteine methyltransferase [EC:
2.1.1.13
]
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse00270
Cysteine and methionine metabolism
hse00450
Selenocompound metabolism
hse00670
One carbon pool by folate
hse01100
Metabolic pathways
hse01110
Biosynthesis of secondary metabolites
hse01230
Biosynthesis of amino acids
hse04980
Cobalamin transport and metabolism
hse04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09100 Metabolism
09105 Amino acid metabolism
00270 Cysteine and methionine metabolism
Hsero_4349 (metH)
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
Hsero_4349 (metH)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
Hsero_4349 (metH)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
Hsero_4349 (metH)
04980 Cobalamin transport and metabolism
Hsero_4349 (metH)
Enzymes [BR:
hse01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.13 methionine synthase
Hsero_4349 (metH)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Met_synt_B12
S-methyl_trans
Pterin_bind
B12-binding_2
B12-binding
CarboxypepD_reg
TadB_TadC_N
Motif
Other DBs
NCBI-ProteinID:
ADJ65817
UniProt:
D8IVK9
LinkDB
All DBs
Position
complement(4976550..4980293)
Genome browser
AA seq
1247 aa
AA seq
DB search
MKPNELCQTELLLRDLMSQRILILDGAMGTMIQRYKLTEEDYRGQRFADFSVPGKDLFVK
GNNELLSLTQPHIIQEIHEQYLAAGADLIETNTFGATSVAQDDYHMAHLVYEMNVESARL
ARAACDKYATPDKPRFVAGALGPTPKTASISPDVNDPAARNVTFDQLVAAYLEQTRALVE
GGADVLLVETIFDTLNCKAALFAIDTFFEESGQRLPIMISGTVTDASGRILSGQTVTAFW
NSIRHARPLTVGLNCALGAALMRPYAEELSKIADTFVCIYPNAGLPNPMSDTGFDETPDV
TSALLKEFAESGFVNVAGGCCGTTPPHIKAIAETVAKIAPRKVPEPTHEMRLSGLEPFTI
NDDSLYVNVGERTNVTGSKAFARLILNEQYDEALAVARQQVENGAQIIDINMDEAMLDSV
AAMTRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCVQGKSIVNSISMKEGEEKFLREA
KLCRRYGAAVIVMAFDEVGQADTFARKIEICERAYRLLVDKLDFPPEDIIFDPNIFAVAT
GIEEHNNYAVDFIEATRWIHQNLPYAKISGGVSNVSFSFRGNDPAREAIHTVFLYHAIKA
GMTMGIVNAGMIGVYDDLPAELRERVEDVVLNRREDATERMIEYAATLKAGDKKEEATLE
WRNLPVAKRLSHALVHGITQWIVEDTEEVRQQIAADGGRPIHVIEGPLMDGMNVVGDLFG
QGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRQLEIATGEVAKPKGKIVIATVKGDVHDI
GKNIVTVVLQCNNFEVVNMGVMVPCAEILAKAKEEKADIIGLSGLITPSLEEMAYVAKEM
QRDPYFAGLKMPLMIGGATTSRAHTAVKIAPNYEGPVVYVPDASRAVSVAQSLLADEQKT
QYVAELNADYERIREQHASKKAAPMLSLAAARANKTKLDFAPVKPKFIGRRLFKNVDLGL
LANYIDWGPFFQTWDLAGPYPAILTDEVVGEAATKVFQEAQAMLKKIIDGRWLTANGVIS
LLPANTVNDDDIEIYTDDSRSQVAFTYYGLRQQTEKPVVDGVARPNQCLSDFIAPKESGV
QDYIGMFAVTAGLGIEKYEKRFEDAHDDYSSIMLKALADRLAEAFAEYLHERVRKDLWGY
AADENLSSTDLIKEKYLGIRPAPGYPACPEHTVKADVFRTMQCDEIGMQLTESYAMFPGA
SVSGFYFAHPQSKYFVVGKIGEDQVVDMAERRHVPKEELERWLAPNL
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgaacgaactgtgccagaccgaattgctgctgcgcgacctgatgtcgcagcgc
atcctcatcctcgatggcgccatgggcaccatgatccagcgctacaagctgaccgaagag
gattatcgcggccagcgtttcgccgatttcagcgttcccggcaaggacctgttcgtcaag
ggcaacaatgaactgctctcgctgacccagccgcacatcatccaggaaatccacgagcaa
tacctggccgccggcgccgacctgatcgagaccaataccttcggcgccaccagcgtggct
caggacgactaccacatggcgcacctggtctacgagatgaacgtggagtcggcccgcctg
gcgcgcgccgcctgcgacaagtacgcgaccccggacaagccgcgcttcgtggccggcgcc
ctcggccctacgcccaagaccgcatcgatctcgccggacgtcaacgaccctgccgcccgg
aatgtgactttcgatcaactggtcgctgcctatctggagcagacccgcgcgctggtcgaa
ggcggcgccgacgtgctgctggtcgagaccatcttcgataccctcaactgcaaggccgcg
ctgttcgccatcgataccttcttcgaggaaagcggccagcgcctgcccatcatgatctcg
ggcaccgtcaccgacgcctccggccgcatcctctcgggccagaccgtgaccgccttctgg
aactccatccgccacgcccgcccgctgaccgtgggcctgaactgcgcgctgggtgcggcg
ctcatgcgcccttatgcggaagagctgtccaagatcgccgataccttcgtctgcatctac
cccaacgccggcctgcccaatccgatgagcgacaccggctttgatgaaacgcccgatgtc
acctcggccttgctgaaggaattcgccgagagcggtttcgtcaacgtcgccggcggctgc
tgcggcaccacgccgccgcacatcaaggccattgccgagacggtggccaagatcgctccc
cgcaaggtccccgagcccacccacgagatgcgcctgtcgggcctggagcccttcaccatc
aatgacgattcgctgtatgtgaacgtcggcgaacgcaccaacgtcaccggctccaaggcc
ttcgcccgcctgatcctcaacgaacagtacgacgaagccctggccgtggcgcgtcagcag
gtcgagaacggcgcgcagatcatcgacatcaacatggatgaagcgatgctcgattcggtc
gccgccatgacgcgcttcctcaacctgatcgcctccgagcccgacatcgcgcgcgtgccc
atcatgatcgactcttccaagtgggaagtgatcgaggcgggcttgaagtgcgtgcagggc
aagtccatcgtcaactccatctcgatgaaggaaggcgaggaaaaattcctgcgtgaagcc
aagctgtgccgccgctatggcgccgccgtgattgtgatggccttcgacgaagtgggccag
gccgataccttcgcccgcaagatcgagatctgcgaacgcgcctatcgcctcttggtggac
aagctggacttcccgcccgaagacatcatcttcgaccccaacatctttgcggtcgcaacc
ggcatcgaggaacacaacaactacgcggtcgacttcatcgaagccacccgctggatccac
cagaacctgccctacgccaagatcagcggcggtgtctccaacgtctccttcagcttccgc
ggcaatgacccggcgcgcgaggccatccacaccgtcttcctgtatcacgccatcaaggcc
ggcatgaccatgggcatcgtcaatgccggcatgatcggcgtctatgacgacctgccggcc
gagctgcgcgagcgcgtggaagacgtggtgctgaaccgccgcgaagacgccaccgagcgc
atgatcgaatacgccgccaccttgaaggccggcgacaagaaggaagaagccaccctggaa
tggcgcaacctgccggtcgccaagcgcctctcgcatgcgctggtgcacggcatcacgcaa
tggatcgtggaagacaccgaagaggtgcgccagcagatcgccgccgatggaggccgtccc
atccacgtcatcgaaggtccgctgatggatggcatgaacgtggtcggtgacctgttcggc
cagggcaagatgttcctgccgcaggtggtcaagtcggcgcgcgtgatgaagcaggccgtg
gcgcacctgattcccttcatcgaagaagagaagcgccagctcgagatcgccaccggtgaa
gtggccaagcccaagggcaagatcgtcattgccaccgtcaagggtgacgtgcacgacatc
ggcaagaacatcgtcaccgtggtcctccagtgcaacaacttcgaagtggtcaacatgggc
gtgatggtgccctgcgccgagatcctggccaaggccaaggaagagaaggccgacatcatc
ggcctgtcgggcctgatcaccccgtcgctggaagagatggcctacgtggccaaggaaatg
cagcgcgatccgtatttcgcgggcctcaagatgccgctgatgatcggcggcgccaccacc
tcgcgcgcccacacggccgtcaagattgcccccaactacgaaggcccggtggtctatgtg
ccggacgcctcgcgcgccgtctcggtggcgcaatcgttgctggccgacgagcagaagacc
cagtacgtggccgagctcaacgccgactacgaacgcatccgcgaacagcacgccagcaag
aaggccgcacccatgctctcgctggccgccgcccgcgccaacaagaccaagctggacttc
gccccggtcaagcccaagttcatcggccgccgcctgttcaagaatgtggacctgggtttg
ctggccaactacatcgactggggtccgttcttccagacctgggacctggccggcccctat
cccgccatcctcaccgatgaagtcgtgggcgaagccgccaccaaggtcttccaggaagcc
caggcgatgttgaagaagatcatcgatggccgctggctcaccgccaatggcgtcatctcg
ctgttgccggccaacaccgtcaacgatgacgacatcgagatctacaccgacgacagccgc
agccaggtcgccttcacctactacggcctgcgccagcagaccgagaagccggtggtggac
ggtgtggcccgccccaaccagtgtctgtcggacttcatcgcgcccaaggagtcgggcgtg
caggattacatcggcatgtttgccgtgaccgctgggctcggtatcgagaaatacgagaag
cgcttcgaggatgcccacgatgattactcgtccatcatgctcaaggccctggccgaccgc
ctggccgaagccttcgccgaatacctgcatgagcgcgtgcgcaaggacctgtggggctat
gccgccgacgagaacctcagcagcaccgacctgatcaaggaaaaatacctcggcatccgc
cccgcgcccggctatccggcctgccccgagcacaccgtgaaggctgacgttttccgcacc
atgcagtgcgatgagatcggcatgcagctgaccgagtcctacgccatgttccccggcgcc
tcggtctcgggcttctactttgcgcatccgcagtcgaagtacttcgtggtcggcaagatc
ggcgaagaccaggtcgtggatatggcagagcgccgccatgtgcccaaggaagaactggag
cgctggctggcgccgaatctgtaa
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