Herbaspirillum seropedicae SmR1: Hsero_4617
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Entry
Hsero_4617 CDS
T01268
Name
(GenBank) efflux transport, RND family, MFP subunit protein
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
hse
Herbaspirillum seropedicae SmR1
Pathway
hse01501
beta-Lactam resistance
hse01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
hse00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Hsero_4617
01503 Cationic antimicrobial peptide (CAMP) resistance
Hsero_4617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hse03036
]
Hsero_4617
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hse02000
]
Hsero_4617
01504 Antimicrobial resistance genes [BR:
hse01504
]
Hsero_4617
Chromosome and associated proteins [BR:
hse03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
Hsero_4617
Transporters [BR:
hse02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
Hsero_4617
Antimicrobial resistance genes [BR:
hse01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
Hsero_4617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl_2
DUF2514
Motif
Other DBs
NCBI-ProteinID:
ADJ66083
UniProt:
D8IXW1
LinkDB
All DBs
Position
complement(5299349..5300569)
Genome browser
AA seq
406 aa
AA seq
DB search
MSHDRHSELGIHPLSEGEPQQRQQMMRRARVVLVVVLLLLAAGAARTVISRVANARELQA
GTAERAKMFVRVAPVRSSAEGQTLALPGTLQGFVQSPISARSGGYLKRWTKDIGAEVKKG
ELLAELDTPEIDQQLTQALAAREQAASSMELARSSMARWEALRKKDAVSQQELDERRSAF
AQASANLAAADANVGRLRQVEGFKRIVAPFSGIITRRNVDVGDLIDPGAGRALFVLSQTD
PLRVYVNVPQSYANLVKPGQQVTVTQSELRGRKFEGKVARTAGAIDAATRSMQVEVTLSN
ADHALLPGAFVQVALPIKPSGALLVAADTLMFRRDGTLVAAVDPHNQVRLKKLRLGRNFG
QTVEVLDGLQGDEHLILNPSDALAEGDQVEPTLEQPKEPEKQKAAS
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatgaccgtcattccgaactcggcatccaccctctctccgagggcgagccgcaa
cagcgccagcaaatgatgcggcgcgccagggtcgtgctggtggtggtgctgctcttgctg
gccgcaggggcggcgcgcaccgtgatcagccgggtcgccaatgcacgcgaactgcaggcc
ggcacggccgagcgcgccaagatgttcgtgcgggtggcgcccgtgcgcagcagcgccgag
ggccagacgctggccctgcccgggaccttgcaaggctttgtgcagtcgcccatctcggcg
cgctcgggcggctatctcaaacgctggaccaaggatatcggcgccgaggtcaagaagggc
gagctgctggccgaactggatacacccgaaatcgaccagcaactcacgcaggccctggcc
gcgcgcgagcaggcggcgtccagcatggagctggcccgcagttcgatggcgcgctgggaa
gcgctgcgcaagaaggatgcggtctcgcagcaggaactcgatgaacgccgcagcgccttc
gcccaggccagcgccaacctggccgccgccgacgccaacgtcgggcggctgcgccaggtg
gaaggcttcaagcgcatcgtggcgcccttctcgggcatcatcacccgccgcaatgtggat
gtgggcgacctgatcgatccgggtgccggacgggcgctgttcgtgttgtctcagacagac
ccgctgcgggtctatgtcaatgtgccgcagtcctatgccaatctggtcaagccgggccag
caggtcacggtgacccagtccgagctgcgcggtcgcaagttcgagggcaaggtggcgcgc
actgcgggcgccatcgatgccgccacgcgctccatgcaggtcgaggtgacgctctccaat
gccgaccacgcgctgctacccggcgcgttcgtgcaagtggcgctgcccatcaagcccagt
ggcgcattgctggtggcggccgataccctgatgttccgccgcgacggcaccctggtggcc
gcggtggacccgcacaatcaggtgcgcctgaaaaaactcaggctgggccgcaacttcggc
cagaccgtcgaagtgctggacggcttgcagggcgatgaacacctgatcctcaatccctcc
gatgcattggccgaaggcgaccaggtcgagccgaccctggaacagcccaaggagccggaa
aagcagaaggccgcctcatga
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