Halobacillus shinanisalinarum: MUO14_16150
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Entry
MUO14_16150 CDS
T09504
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hshi
Halobacillus shinanisalinarum
Pathway
hshi03030
DNA replication
hshi03410
Base excision repair
hshi03420
Nucleotide excision repair
hshi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUO14_16150 (ligA)
03410 Base excision repair
MUO14_16150 (ligA)
03420 Nucleotide excision repair
MUO14_16150 (ligA)
03430 Mismatch repair
MUO14_16150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hshi03032
]
MUO14_16150 (ligA)
03400 DNA repair and recombination proteins [BR:
hshi03400
]
MUO14_16150 (ligA)
Enzymes [BR:
hshi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUO14_16150 (ligA)
DNA replication proteins [BR:
hshi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUO14_16150 (ligA)
DNA repair and recombination proteins [BR:
hshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUO14_16150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUO14_16150 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUO14_16150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUO14_16150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
5_3_exonuc
DUF2777
Motif
Other DBs
NCBI-ProteinID:
UOQ92023
LinkDB
All DBs
Position
3246037..3248037
Genome browser
AA seq
666 aa
AA seq
DB search
MSPNDAQEVIEDLRQKLDQYNYEYHTLDKPTVSDYEYDQKMRELLDLESQFPELVTADSP
TQRVGDEPLDAFQKVQHNVAMLSLGNAFDEQELRDFDRRVREGTGEEVTYVCELKIDGLA
VSLRYEDGVLVQGATRGDGTTGEDITKNLRTIRSIPLRLRKPETIEVRGEAFMPKKSFLA
LNEARESNGDEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWRDEPTRAHSERLH
ELKNLGLKTNPEWKKCNHIDEVIDYVHSWVERRPDLDYEIDGIVIKVDRLDQQQALGFTA
KSPRWATAYKFPAEEAVTKLNKIELSVGRTGVVTPTAILDPVKVAGTTVQRASLHNEDLI
REKDIRIGDTVVIKKAGDIIPEVVRVLTDQRSGEEEPYHMPEHCPACESKLVRLDEEVAL
RCINPNCNAQLREGLIHFVSRNAMDIEGLGEKVIAQLFEERLIETIADLYKLEKEELLKL
ERMGEKSVQNLLKAIEDSKENSLERLLFGLGIRYVGTKAANTLAQEFETMEQLMNASEEA
LVQVPEIGEKMADSVARYFAKPQVIQLMEELNRLGLNMEYKGPRKNDGPEDSPFKGKTVV
LTGKMENYTRSEAKNIVQNLGGNVTNSISKNTDLLIAGEDAGSKYEKAEKLGVETWTEDE
FTKSLT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgagtccaaacgatgcacaagaagtcattgaagatcttcgccaaaagcttgatcaatat
aattatgaatatcacactctagataagccgactgtttcagattatgaatatgaccaaaaa
atgagggagctgcttgacttggagtcacagtttccggagcttgtcacagcggattccccg
acgcaacgagtaggggacgagcctctcgatgcttttcaaaaggtccagcacaatgtggct
atgctcagcctgggcaatgcttttgacgagcaagagcttcgtgactttgatcgtcgtgtc
cgtgagggaacaggggaagaggtcacttatgtttgcgaattgaaaattgacggtcttgca
gtttccctacgttatgaagatggagttctggtgcagggggcaacacgtggtgacgggaca
acaggtgaagatattaccaagaatttgcgtacgatacgcagcatcccgcttcgtttacga
aagcctgaaaccattgaagtccgtggagaagcttttatgccaaagaaatcttttcttgct
ttgaatgaggcgcgcgaaagtaatggggatgaaccatttgccaatccgagaaatgccgca
gcaggctcactaagacagcttgaccctaaaattgccgctaaacgcaatttagacattttt
ctgtatggagtgggagaatggcgggacgaaccaacgcgtgcccatagtgaacgtttacat
gaattaaagaatcttggcttaaaaacaaacccagagtggaaaaagtgtaaccatattgat
gaagtaatcgactatgttcatagctgggttgaaagaagaccggatttagattatgaaatc
gatggaatcgttattaaagtggatcgcttggatcagcaacaggcacttggctttacagcg
aaaagtccacgctgggcaacagcctataaattcccggcagaagaggcggttacaaaactt
aataaaattgaattaagtgtagggcgaacgggagtagtcacaccaacggctatccttgac
cccgtcaaagttgccggaacaactgtgcagcgagcttctttacacaatgaggacctcatt
cgtgagaaagatattcggattggtgataccgtggtgattaaaaaagctggcgatattatt
ccggaagtcgtccgcgtcttgacagatcagcgttcgggtgaggaagaaccgtatcatatg
ccggaacattgcccggcatgtgagagtaagctggtccggcttgatgaagaggtggcgtta
agatgtatcaaccctaattgtaatgcgcaacttcgagagggtttgattcattttgtatca
agaaatgcgatggacatcgaaggattaggggaaaaagtaattgcccaactttttgaggag
cggctgatcgaaaccatcgccgatctctataagttagaaaaagaagagctgcttaaactc
gaacgaatgggcgaaaaatcggtgcaaaacctgttgaaagccattgaagattcaaaagaa
aattcattagaacggctgttatttggtttagggatacgttatgtcggaacgaaagcagct
aatacccttgcccaagaattcgaaacgatggagcagctcatgaatgctagtgaagaagcc
ctcgtgcaagttccagaaatcggcgaaaaaatggctgactctgtagcacgttattttgcc
aaacctcaggtcatccagttaatggaagaactgaaccggctggggttaaatatggagtat
aagggaccaagaaagaatgatggaccagaggattcaccgtttaaggggaaaacggttgtg
ctcacggggaagatggagaactatacccgttctgaagcaaagaatattgttcaaaacctt
ggcggtaacgtgaccaacagcatcagtaaaaacacagatctattaatcgccggtgaggat
gcgggctcaaaatatgaaaaagctgagaagctcggtgttgagacctggactgaagacgaa
tttacgaaatctttaacataa
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