Haloarcula marismortui ATCC 33800: KDQ40_12155
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Entry
KDQ40_12155 CDS
T07272
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsin
Haloarcula marismortui ATCC 33800
Pathway
hsin03030
DNA replication
hsin03410
Base excision repair
hsin03420
Nucleotide excision repair
hsin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDQ40_12155 (ligA)
03410 Base excision repair
KDQ40_12155 (ligA)
03420 Nucleotide excision repair
KDQ40_12155 (ligA)
03430 Mismatch repair
KDQ40_12155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsin03032
]
KDQ40_12155 (ligA)
03400 DNA repair and recombination proteins [BR:
hsin03400
]
KDQ40_12155 (ligA)
Enzymes [BR:
hsin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDQ40_12155 (ligA)
DNA replication proteins [BR:
hsin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDQ40_12155 (ligA)
DNA repair and recombination proteins [BR:
hsin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDQ40_12155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDQ40_12155 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDQ40_12155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDQ40_12155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QUJ71453
UniProt:
M0JX62
LinkDB
All DBs
Position
complement(2349459..2351534)
Genome browser
AA seq
691 aa
AA seq
DB search
MTTAEDVAGNPYISDPRTDFESVEDVDAETAREQADQLREALRYHDYRYYVENDPVIGDR
AYDALFSRLQRLESAFDLDTDGSPTQRVGGEPLDELPDVEHVARMGSIDQGGEEADVREF
DSRVRNGLDDDVQYFCEPKFDGLSVEIVYEDGVYQRAATRGDGEVGEDVTENVRTISSVP
QRLRGDYPDFLAVRGEVYIPRDAFTAFNRERVERGEDPFANPRNAAAGTLRQLDPSVTAE
RPLSIFFFGVLDASVDFESHSELHERFPEWGLRVCDRTAVVDDIDAAIDYRNEQQQARDD
LDYEIDGVVIKVDDMDACDDLGSTARAPRWAFAYKFPARKEETTVRDIVVQVGRTGRLTP
VALMDPVEVGGVTVSRASLHNPSLIADLGVDVGDRVRIKRAGDVIPDVVEVLDDDGDGHF
EFPETCPACDSPVEHDGPMAFCTGGLTCPAQRERSVEHYASRDALDIEGVGEKAVQQLLD
AGLVSDPADLYDLTVEDLTGLEGWGETSARNLVDGMDSAREPPLADFLVALGIPEVGTVT
ARNLAQEFGTFEAILDAADEGDTDAFEAVPDVGQTVARSIVEFFEGEGNRAVIDRLLDHV
EPQAAEETDGDALDGQTFVFTGSLDGYTRGEAQELVERNGGSATSSVSGNTDYLVLGDNP
GQRKQDDAAEHGVETLTEDEFEELLDDAGVL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgccgaggatgtcgccgggaacccctatatttcagacccgcggactgacttc
gagtccgttgaggatgtcgacgccgagaccgcccgcgagcaagccgaccagttgcgcgag
gcgctccgctatcacgactaccggtactacgtcgagaacgacccagtcatcggtgaccgg
gcttacgacgcgctgttctcccggcttcagagacttgaatcggcgttcgatcttgacact
gacggcagtccgacccagcgcgtcggcggcgagccactggacgagctccccgatgtcgaa
cacgtcgcccggatgggctctatcgatcagggcggcgaggaagcggacgtacgggagttc
gacagccgagtccgcaatggcctcgacgacgacgtgcagtacttctgcgaaccaaagttc
gacggcctctctgtcgagattgtctacgaggacggcgtctaccagcgagccgcgacgcgt
ggcgacggcgaggtcggcgaggacgtgaccgagaacgtccggaccatctccagcgtccca
cagcgactccgcggtgactaccccgacttcctggctgtccggggcgaggtgtacatccca
cgagacgctttcacggcgttcaaccgcgagcgcgttgagcgcggcgaggacccctttgcg
aacccccgcaacgccgccgccgggacgctccgccagctcgacccgtcggtgaccgcagag
cgcccgctgtcgatattcttcttcggcgtcctcgacgcctcggtcgacttcgagagccac
agcgagctgcacgagcggttccccgagtggggactccgggtctgtgaccggactgccgtc
gttgacgacatcgacgccgccatcgactaccgaaacgagcagcagcaggcccgcgacgac
ctcgattacgaaatcgacggcgtcgtcatcaaggtcgacgacatggacgcctgcgacgac
ctcgggtcgaccgcccgcgccccaaggtgggccttcgcctacaagtttccggcccgcaag
gaggagacgacggtgcgggacatcgtcgtgcaggtcggccggaccggacggctcaccccg
gtcgcgctcatggaccccgtcgaggtcggcggcgtcaccgtctcccgtgcctcgctgcac
aacccgtcgctcatcgctgacctcggcgtcgacgtgggcgaccgcgtccgcatcaagcga
gccggcgacgtcatcccggatgtcgtcgaagtgctcgacgacgacggcgacggccatttc
gagttcccggagacctgtccggcctgtgacagccccgtcgaacacgacggcccgatggcg
ttctgcaccggtggcctcacctgccccgcccagcgcgagcgcagcgtcgagcactacgcc
agccgcgacgcactggatatcgaaggcgtcggcgagaaggccgtccagcaactcctcgac
gccggtcttgtctcggaccccgcggacctgtacgacctcaccgtcgaggacctcaccggt
ctggagggctggggcgagaccagcgcccggaacctcgttgatgggatggacagcgctcgg
gagccgccgcttgcggatttcctcgtcgcgctgggtatccccgaagtcgggactgtcacg
gcccgaaacctcgcacaggagttcggcacgttcgaggcgatactcgacgctgccgacgag
ggcgacaccgacgccttcgaggccgtgcctgacgttggtcagaccgtcgcccgctctatc
gtagagttcttcgagggtgaggggaaccgcgccgtcatcgaccgcttgctcgaccacgtc
gagccacaggccgccgaggagacggatggtgacgcgctggatgggcaaacgttcgttttc
actgggtcactcgacggctacacccgcggcgaggcgcaggaactggttgagcgcaacggt
gggtcagcgacgagcagcgtctccggcaacacagactatctggtgcttggcgacaacccc
ggccagcgaaaacaggacgatgcagccgaacacggcgtcgagacgctcaccgaggacgag
ttcgaagaactactggacgacgctggtgtgctgtga
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integrated database retrieval system
