Histophilus somni 2336: HSM_0700
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Entry
HSM_0700 CDS
T00673
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsm
Histophilus somni 2336
Pathway
hsm03030
DNA replication
hsm03410
Base excision repair
hsm03420
Nucleotide excision repair
hsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HSM_0700
03410 Base excision repair
HSM_0700
03420 Nucleotide excision repair
HSM_0700
03430 Mismatch repair
HSM_0700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsm03032
]
HSM_0700
03400 DNA repair and recombination proteins [BR:
hsm03400
]
HSM_0700
Enzymes [BR:
hsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HSM_0700
DNA replication proteins [BR:
hsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HSM_0700
DNA repair and recombination proteins [BR:
hsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HSM_0700
NER (nucleotide excision repair)
GGR (global genome repair) factors
HSM_0700
MMR (mismatch excision repair)
DNA ligase
HSM_0700
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HSM_0700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
ACA32364
UniProt:
B0USD9
LinkDB
All DBs
Position
complement(794099..796102)
Genome browser
AA seq
667 aa
AA seq
DB search
MIKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASENSPTQRV
GAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVHHSLTFCCEPKLDGLAV
SILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQAGF
EKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDTHFA
RLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQQLG
FISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNG
DEIARLDIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPTNCPVCDSVISKIEGE
AVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQLVERELVHTPADLFKLDQVT
LMRLERMGAKSAENALASLAKAKKTTLARFIFALGIREVGETTALNLATHFKTLEAFENA
TFEQLQKVQDVGEVVAKRIRSFWSEPHNVAVVKDLIAQGIHWDNVEVKEVRDNPLKGKTV
VLTGTLTKMGRSEAKEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSEN
EFLALLA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagcaacaaattgaagaattacgacaactattacgccatcatgaatatcagtat
catgtgttagacaatccgcaaattccggatagtgaatacgatcgcttatttcatcaatta
aaagcgttggaacaacaatatcctgaatatgccagtgaaaattcgccaacacagagagta
ggggcgaaaccgttaagtaattttgctcaagttaaacatgatattccaatgctatcctta
gataatgctttttctgatgaagatttctttgcttttgtcaaacgtattcaagatcgtttg
atacatgttcatcattctttaacattttgttgcgaacctaaattagacggtttggcagtc
agtattttgtatataaacggtcagctggtacaggctgcaactcggggcgatgggacgacc
ggtgaagatattacggcaaatattcgtactattcgtaatattccattgcaattattaacg
gataatccaccgactcgtttggaggtgcgtggggaagtttttatgtcgcaagcaggtttt
gaaaaactgaacaaaacagctttagcgaaaggagaaaaaacatttgctaatccacgtaat
gcggctgcaggttctttgcgtcaacttgatcccaaaattaccggtcaacgtcctttgatg
ttaaacgcttatggtattggtattgcagaaggagtggaattaccggatacacattttgct
cgtttacaatggctaaaatctattggcataccggtaaataatgaaattcaattatgtcat
gggattgaaaaagtgttggatttctaccgcactattaagcaaaaacgcagttccttaggt
tatgacattgatggcacggtattaaaaattaatgatattgacttgcaacaacaacttggt
tttatttctaaagcacctcgctgggcaattgcttataaatttccggcacaagaagagctg
acaattttgaataatgtggagtttcaggttgggcgaaccggtgccattacaccggtagca
aaattagaacctgtttttgtcgcaggagtcactgtgagtaatgcgactttacataatggt
gatgaaatagcacgtttggatattgcgattggtgataccgtgattgtgcgtcgtgccgga
gatgtgattccgcaaattatcggcgtgttacatgaacgtcgtccggaaaatgcaaaatct
attatttttccaacaaattgtcctgtgtgtgattccgttattagcaaaattgagggagag
gcagttgctcgttgtacgggaggcttaatttgtgctgctcaacgcaaagaggcacttaaa
cattttgtttcacgcaaagcgatggatattgacggcattggtgcaaaattaattgaacag
ttggttgaaagggagttagtacatacaccggctgacttatttaaattagatcaggttact
ttaatgcgtttggagcgtatgggggcgaaatcggcagaaaatgccttagcaagtttagct
aaagcgaaaaaaaccacattggctcgttttatttttgcacttggcatccgtgaagttggg
gaaactactgcattaaatttagcaactcattttaagacactagaggcttttgaaaatgca
acgtttgagcaattgcaaaaggtacaagatgttggtgaggtagtggctaaacgtattcgt
tcattctggtctgagcctcataatgttgctgtggtaaaagatttaattgcacaaggcatt
cattgggacaacgttgaggttaaagaggtgcgggacaatcctttgaaaggaaaaaccgtc
gtattaaccggtacgttaacgaaaatggggcgttcagaggcaaaagaatacttgttgcaa
ttaggctgtaaagttagcggcagtgtttcgagtaaaacggattttgttattgcaggggaa
agtgcgggttcaaaattaactaaagccactgagcttggtattaacattctgagtgaaaat
gagtttttggctttgttagcataa
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