Histophilus somni 129PT: HS_0377
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Entry
HS_0377 CDS
T00386
Symbol
lig
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hso
Histophilus somni 129PT
Pathway
hso03030
DNA replication
hso03410
Base excision repair
hso03420
Nucleotide excision repair
hso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HS_0377 (lig)
03410 Base excision repair
HS_0377 (lig)
03420 Nucleotide excision repair
HS_0377 (lig)
03430 Mismatch repair
HS_0377 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hso03032
]
HS_0377 (lig)
03400 DNA repair and recombination proteins [BR:
hso03400
]
HS_0377 (lig)
Enzymes [BR:
hso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HS_0377 (lig)
DNA replication proteins [BR:
hso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HS_0377 (lig)
DNA repair and recombination proteins [BR:
hso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HS_0377 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HS_0377 (lig)
MMR (mismatch excision repair)
DNA ligase
HS_0377 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HS_0377 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
ABI24655
UniProt:
Q0I2H6
LinkDB
All DBs
Position
complement(385592..387613)
Genome browser
AA seq
673 aa
AA seq
DB search
MKQGIFMIKQQIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASEN
SPTQRVGAKPLSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVHHSLTFCCEPK
LDGLAVSILYINGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVF
MSQAGFEKLNKTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVEL
PDTHFARLQWLKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDID
LQQQLGFISKAPRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSN
ATLHNGDEIARLDIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPSNCPVCDSVI
SKIEGEAVARCTGGLICAAQRKEALKHFVSRKAMDIDGIGAKLIEQLVERELVHTPADLF
KLDQVTLMRLERMGAKSAENALASLAKAKKTTLARFIFALGIREVGETTALNLATHFKTL
EAFENATFEQLQKVQDVGEVVAKRIRSFWSEPHNVAVVKDLIAQGIHWDDVEVKEVRDNP
LKGKTVVLTGTLTKMGRSEAKEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGI
NILSENEFLALLA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcaaggaatttttatgatcaagcaacaaattgaagaattacgacaactattacgc
catcatgaatatcagtatcatgtgttagacaatccgcaaattccggacagtgaatacgat
cgcttatttcatcaattaaaagcgttggaacaacaatatcctgaatatgccagtgaaaat
tcgccaacacagagagtaggggcgaaaccgttaagtaattttgctcaagttaaacatgat
attccaatgttatccttagataatgctttttctgatgaagatttctttgcttttgtcaaa
cgtattcaagatcgtttgatacatgttcatcattctttaacattttgttgcgaaccgaaa
ttagacggtttggcagtcagtattttgtatataaatggtcagctggtacaggctgcaact
cggggcgatgggacgaccggtgaagatattacggcaaatattcgtactattcgtaatatt
ccattgcaattattaacagataatccaccggctcgtttggaggtgcgtggggaagttttt
atgtcgcaagcaggttttgaaaaactgaacaaaacagctttagcgaaaggagaaaaaaca
tttgctaatccacgtaatgcggctgcaggttctttgcgtcaacttgatcccaaaattacc
ggtcaacgtcctttgatgttaaacgcttatggtattggtattgcagaaggagtggaatta
ccggatacacattttgctcgtttacaatggctaaaatctattggcataccggtaaataat
gaaattcaattatgtcatgggattgaaaaagtgttggatttctaccgcactattaagcaa
aaacgcagttccttaggttatgacattgatggcacggtattaaaaattaatgatattgac
ttgcaacaacaacttggttttatttctaaagcacctcgctgggcaattgcttataaattt
ccggcacaagaagagctgacaattttgaataatgtggagtttcaggttgggcgaaccggt
gccattacaccggtagcaaaattagaacctgtttttgtcgcaggagtcactgtgagtaat
gcgactttacataatggtgatgaaatagcacgtttggatattgcgattggtgataccgtg
attgtgcgtcgtgccggagatgtgattccgcaaattatcggcgtgttacatgaacgtcgt
ccggaaaatgcaaaatctattatttttccaagcaattgtcctgtgtgtgattccgttatt
agcaaaattgagggagaggcagttgctcgttgtacgggaggcttaatttgtgcagctcaa
cgcaaagaggcacttaaacattttgtttcacgcaaagcgatggatattgacggcattggt
gcaaaattaattgaacagttggttgaaagggagttagtacatacaccggctgacttattt
aaattagatcaggttactttaatgcgtttagagcgtatgggagcgaaatcggcagaaaat
gccttagcaagtttagctaaagcgaaaaaaaccacattggctcgttttatttttgcactt
ggcatccgtgaagttggggaaactactgcattaaatttagcaactcattttaagacacta
gaggcttttgaaaatgcaacgtttgagcaattgcaaaaggtacaagatgttggtgaagta
gtagctaaacgtattcgttcattctggtctgagcctcataatgttgctgtggtaaaagat
ttaattgcacaaggcattcattgggacgacgttgaagttaaagaggtgcgggacaatcct
ttgaaaggaaaaaccgtcgtattaaccggtacgttaacgaaaatggggcgttcagaggca
aaagaatatttgttgcaattaggctgtaaagttagcggcagtgtttcgagtaaaacggat
tttgttattgcaggggaaagtgcggggtcaaaattaactaaagccactgagcttggtatt
aacattctgagtgaaaatgagtttttggctttgttagcataa
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