Hippoglossus stenolepis (Pacific halibut): 118099933
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Entry
118099933 CDS
T08308
Symbol
otofa
Name
(RefSeq) otoferlin isoform X3
KO
K19949
otoferlin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118099933 (otofa)
Membrane trafficking [BR:
hsp04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
118099933 (otofa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
118099933
NCBI-ProteinID:
XP_035000641
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All DBs
Position
20:complement(14140176..14206080)
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AA seq
2053 aa
AA seq
DB search
MMALMVHLRTVDHLRGKGDRVAKVTFRGLPSYSRVAENCEEVAHFNETFRWPIASRLDGN
EMLEIQVYNYSKVFSNRLVGTFCMVLQKVAEEGHLELTDTLIDDNNTSIKTSVTIEIRYQ
AMDGTVGMWSDGEFLDVPDDRDGMFTFETDSLLSGRSHGSGTSPGRTLQGSIPTFRKAGK
GVFSAMKLGKMKSSKDDHKRGDEPAVLEMDDLDRKAIRLAGTLDPDTISLASVTAVTTNV
SNKRSKPDIKMEPGSGRPVDYQISITVIEARQLIGLNMDPVVCVEIGDDKKYTSMKESTN
CPYYNEYFVFDFHVPPDVMFDKIIKLSVIHSKNLLRSGTLVGTFKMDVGTVYFQPEHQFY
HKWAILSDPDDITAGCKGYVKCDIAVVGKGDNIKTPHKANETDEDDVEGNLLLPEGIPAG
RQWARFYVKIYRAEGLPKMNTNIMANVKKAFIGENRDLVDPYVQVQFAGQKGKTSVQKSS
YEPIWNEQVVFTELFPPLCKRLKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKGFLPIMG
PAWVNMYGSTRQYTLMDEHQDLNEGLGEGVSFRARLLLSIAVEILDTTSPEILSSTEVQV
ETVSNISESATGKIEEFFLFGSFLEATMIDRKIGDKTISFEITIGNYGNQIDGVSKPSSA
KKKKKKDAENEEEESELIHNSSEDEADEDGDMVSVSSTPLMRPVITDRNYFHLPYFEKKP
CVYIKSWWQDQRRRLYNSNMMDKIADKLEEGLNDVQEVIKTEKAFPERRLRGVLEELSVG
CSRFVILANKDLNQAGRTKLDRERLKSCMREMDSMGQQAKQIRTQVKKNTVRDKLKLAQN
FLQKLRFLADEPQHSTPDVFVWMMCNNKRIAYARIPSKDILYSIVDEETGKDCGKVKAVF
LKLPGKKGFGPAGWTVQAKLELYLWLGLNKQRKDFLSGLPNGFEEIKAANMGPSLQPVPP
VSLVYNMKQVFQLRAHMYQARSLFAADSSGLSDPFARVFFSTHSQVTEVLSETLCPTWDQ
LLVFDDVELFGEASELRDDPPIIVIEIFDQDTVGKAEFIGRTFAKPTIKMCDEHYGPPRF
PPQLEYYQVYRGNCIAGELLAAFELLQIPFDAEEIRRALIAVHNFAVPQIKIGQGGRADL
PPLEGPTDSEHGPILPVPLGIRPILSRYRIEVLFWGLRDLKRINLAQVDRPRVDIECAGR
GVQSALIQNYKKNPNFSTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYILVGSHAVSS
LRRFIYSAPDKTSNNWATAAKLMNGYMVLANGGSQPRPSPSISSRTFSRPAGDILVNMDG
EPLARKMDTFVKLDAMSDAVVKVDMTEEESDKEKKKKKKKKKGGVEEEEETDESVLDWWS
KYFASIETLKETLRAQEAAQAEAEEREDLEIAAEGAEIKPDDPLLKGSRTKEKSKDKKSS
KDKKKSHAADGTEKRPVKARVDQLMVYNKELESEYSNFEDWLHTFNLYRGKAGDDDEQVL
DDDRIVGRFKGSLCMYKLPLSEEITREAGFDPNMGMFQSIPHNDPINVLVRVYVVRATDL
HPADINGKADPYVVIKLGKSEVKDKENYISKQLNPVFGKSFEIEATFPMESMLTVSVYDW
DLVGTDDLIGETKIDLENRFYSKYRATCGISSNFSLHGYNVWRDPLKPSQILAKLCKEGK
IDGPHYGPGGKVKVASRIFMGPTEIENENGLKKQTEEHLALTVLNHWEEIPRVGCKLVPE
HVETRPLLNPDKPGIEQGRIEMWVDMFPMDMPAPGPAIDIAPRKPKRYELRVIIWNTDEV
ILEDDDYFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRFVYPFDYLMAEE
KIVISKKESMFSWDETEYKIPPRLTLQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQC
SLDMIRNEQELPTISIFKQKRVKGWWPFVARDENDEMELTGKVEAELHLVTAEEAEKSPV
GLGRNEPDPLEKPNRPDTTFLWFLSPLKAIRYLVCNRYKWLIIKIVLALLLLIMLGLFLY
SMPGYLVKKLLGA
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgctaatggttcacctgaggacggtcgatcacctgcggggaaaaggggaccgg
gtcgccaaagttacgttcagaggtctgccctcctacagtcgcgtggcagagaactgtgag
gaggtggcccacttcaatgagacatttcgatggcccattgccagcaggctggatggaaac
gagatgctggagatccaagtgtataactacagcaaagtcttctctaacagactggtgggg
actttctgtatggtgcttcagaaggtggctgaagagggacacctggagctgacggacaca
ctcatcgatgataacaacacatcgataaagaccagcgttactatagagatcagataccag
gcgatggatggcacagtgggaatgtggagcgacggggagttcctggatgtgcctgacgac
cgggatgggatgtttacatttgaaaccgacagcttgctctccggacggagccacgggtca
gggacgtcccctggtcggaccttacagggatccataccgaccttcagaaaagcagggaag
ggggttttctcagccatgaagctcggcaagatgaaaagctctaaagacgatcacaagaga
ggagatgagccggcagtcctggaaatggatgacctggacaggaaggcgatccgtcttgct
ggaacacttgacccagacaccatctccctggcctccgtcaccgccgtcaccaccaacgtc
tcaaataagaggtcaaagccagatataaagatggaaccgggctctggacgaccagtggat
tatcagatcagcatcacggtgatcgaggcccggcagctgatcggcctcaacatggaccct
gtggtgtgtgtggagattggagacgacaagaagtacacatccatgaaggagtccaccaac
tgcccatactacaacgagtattttgtctttgacttccacgtccctcctgatgtcatgttt
gacaagatcatcaagctctcagtgattcactccaaaaacctcctccggagtgggaccttg
gtgggaacatttaagatggatgttgggactgtttactttcagcctgaacaccagttctac
cacaagtgggccatcctgtctgaccctgatgacatcacagctggatgtaaaggatatgta
aagtgtgacatcgctgtggttggaaagggcgacaacatcaagaccccacacaaggccaac
gagactgatgaagacgacgtagagggaaacctcctgctcccagagggcatcccagcaggg
aggcagtgggcgaggttttatgtgaaaatctaccgtgcagagggactccctaaaatgaac
accaacataatggcgaatgtgaaaaaggccttcataggagagaacagagatctggtggac
ccttacgttcaagtgcagtttgctgggcagaaagggaaaacgtctgtccagaagagcagt
tatgaaccgatctggaatgagcaggtcgtctttactgaactcttccctccactctgcaaa
cgcctgaaggtccagattcgagactcggataaggtcaacgacgttgccataggaacccat
tttattgacctgcgcaagatatcgaatgatggcgataaagggttcctgcccatcatgggc
ccggcctgggtcaacatgtacggctccactcgtcagtatactctgatggacgagcaccag
gacctgaatgagggacttggagaaggggtttcctttagagcccgtcttctgctctccatc
gccgtggagatcctggacaccacttcccctgagatcctcagctccactgaggttcaggtg
gagactgtgtccaacatctcagagagcgccacagggaaaatagaggagttcttcctcttc
ggttccttcctcgaagccaccatgatcgacaggaagattggtgacaaaacgataagtttt
gaaattacgataggtaactatggcaaccagatagatggtgtaagcaagccctcgtcagcg
aagaagaagaagaagaaagatgcagagaacgaagaggaggagagcgagctcattcacaac
tctagcgaggacgaggcggacgaggacggagacatggtctcagtctcttccactccactc
atgaggcccgtcattacagacagaaattactttcatcttccctactttgaaaagaagccg
tgtgtctacatcaagagctggtggcaggaccaacggagacgactctacaactccaatatg
atggacaagatcgctgacaagctggaggagggtttgaatgatgttcaggaggtcattaag
acggagaaggcctttccagagcgcagactcaggggagtgctggaggagctcagcgttggc
tgcagtcgctttgtgattctggctaacaaggacttgaaccaggcaggcagaaccaaactg
gatcgagaacggctcaagtcctgcatgagggaaatggacagcatgggtcagcaggccaag
cagattcggactcaggtgaagaagaacacggtcagagacaaactcaagctggcgcagaac
ttcctgcagaagctccgtttcctcgctgatgagcctcagcacagcacaccagatgttttc
gtctggatgatgtgtaacaacaagcgcatcgcttacgcccggattccctccaaagacatc
ctgtactccatagtggatgaggaaactggtaaagactgtggtaaagtcaaagccgtcttc
ctcaagctgcctggtaagaagggctttggtcctgcaggttggaccgttcaagctaagctg
gagttgtatctatggctgggcctcaacaagcagagaaaggacttcctcagcggtttgccc
aacggttttgaagagattaaagctgccaatatgggccccagtcttcagcctgtccctcct
gtcagcctcgtctacaacatgaagcaggtgtttcagctgcgagcacacatgtaccaggcc
cgcagtctgtttgccgctgacagcagtggcctttcagatccctttgctcgggtcttcttc
tccacacacagccaggtcaccgaggtcctgagtgagaccctttgtcctacgtgggaccag
ctgctggtgtttgacgatgtggagttgttcggggaggccagcgagctgagagacgacccg
ccgatcattgtcattgaaatctttgaccaggacactgtgggcaaggcagagttcataggt
aggacgtttgcgaagcccaccatcaagatgtgtgacgagcactacggcccgccgaggttc
ccgccgcagctggagtactaccaggtttacagagggaactgcatcgccggggagctcctg
gctgcctttgaactgctgcagattcctttcgatgcggaggagatcaggcgagctctcatc
gctgtccataactttgctgtacctcaaataaagattggtcaaggaggcagagcagacctt
cctccccttgagggcccaacagactcagagcatgggcccattcttcctgtgccgttgggc
atcagacccatcttgagccgctaccgcattgaagttttgttctgggggttaagggacctt
aagaggattaatttggctcaggtggatcggcctcgtgtggatatagaatgtgcaggtaga
ggtgttcaatctgccctgatccagaactacaagaaaaaccccaacttcagcactttggtc
aaatggtttgaggtggaccttccagagaatgagctcctgcacccccctctcaacatccgg
gtggtggactgtcgagcgtttggccgatacatcctggtggggtcgcacgctgtcagcagc
ctgagacgcttcatctacagcgccccagacaagacctccaacaactgggccactgcagct
aagctaatgaacggctacatggtccttgcaaatggcggctcgcagcctcgcccctcaccc
agcatttcctcccgcaccttctctcgccccgcaggtgacatcctcgtcaacatggacgga
gaacctctggccagaaagatggacacattcgtcaagttagacgccatgtctgatgctgtt
gtaaaagttgacatgactgaggaggagagcgacaaagagaaaaagaagaagaagaagaaa
aagaagggaggagtcgaggaagaggaagagacggatgagagcgtgctggactggtggtcc
aaatattttgcctcgatagagacgctgaaggagaccctcagagctcaggaggcggctcag
gcggaggcggaggagagagaggacctggagatagcagcagagggggcagaaatcaaaccc
gatgaccctcttctgaaaggctccaggacaaaagagaagagcaaagacaagaagagctcc
aaggacaagaagaagagtcatgctgcggacgggaccgagaaacgaccagtgaaagcgaga
gtggaccagctgatggtttacaacaaggagctggagagtgagtacagcaactttgaagac
tggcttcacactttcaacctgtacagaggtaaagccggggacgacgacgagcaagttctg
gacgacgacaggattgtgggcagattcaagggatccctgtgtatgtacaagctgcctctg
tcggaggagatcaccagagaggcaggatttgatcctaacatgggaatgttccagagcatt
ccgcataacgatccaatcaacgtcctcgtccgtgtctacgtggtcagggctaccgatctt
catcctgctgatatcaacgggaaggctgatccgtacgttgtcatcaaactgggcaagtca
gaggtcaaagacaaagagaactacatctccaaacagctcaatcctgtgtttggcaaatca
tttgaaatcgaggccaccttccccatggagtccatgctgacggtgtctgtgtacgactgg
gacctggtcggcactgacgacctgatcggagagacgaaaatcgacctggagaatcgtttc
tacagcaaatacagagccacctgcggcatttcatccaacttctctctgcacggatacaat
gtgtggcgggaccctctgaagcccagtcagatcctggccaagctctgtaaggaaggcaag
atcgatggacctcattacggacctggaggcaaagtcaaggtggcgagtcgaatattcatg
ggaccaacggagatagaaaatgagaatggtttgaagaagcagaccgaggagcatttggcc
ctgacagtgctgaaccactgggaggagatcccgagagtgggctgcaaactcgtccccgag
cacgtggagaccagacccctgctgaacccggacaagcccggcatcgaacagggccgtatc
gagatgtgggtcgatatgtttcctatggacatgccggctcctggacctgcgattgacata
gcgccacggaaaccaaagagatatgagctcagggtgattatttggaatacagacgaagta
atactggaggacgatgattacttcactggggaaaagtccagtgacatatttgtcaggggg
tggctgaaggggcagcaggaggacaagcaggacacagacgtgcactatcactcgctgacc
ggcgagggcaacttcaactggcgcttcgtctaccccttcgattacctcatggctgaggag
aagatcgtcatctctaagaaagagtccatgttctcctgggacgagaccgaatacaagatc
ccccctcgcctcacgctgcaggtgtgggacgccgaccacttctctgcagatgacttcctg
ggtgcaattgagctggacctgaaccggttcccccgcggcgccaagacggccaagcagtgc
tcgctggacatgatccgaaatgagcaggagcttcccaccatctccatcttcaaacagaag
agagtgaaaggctggtggccattcgtggcccgtgatgagaacgatgagatggagctgacg
ggtaaagttgaagccgagcttcacctggtgactgcggaagaagcagagaaaagtcctgtg
ggacttggccgaaatgagccggatccactggagaaaccaaaccgcccagacaccaccttc
ctgtggttcctgagcccgctgaaagccatccgctacctggtgtgcaaccgctacaagtgg
ctgatcatcaagatcgtgctggccctgctgctgctcatcatgctgggcctcttcctctac
agcatgccgggctaccttgtcaagaagctgctgggggcctga
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integrated database retrieval system
