Hippoglossus stenolepis (Pacific halibut): 118100231
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Entry
118100231 CDS
T08308
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03440
Homologous recombination
hsp03460
Fanconi anemia pathway
hsp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118100231
09124 Replication and repair
03440 Homologous recombination
118100231
03460 Fanconi anemia pathway
118100231
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118100231
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118100231
03036 Chromosome and associated proteins [BR:
hsp03036
]
118100231
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118100231
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118100231
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118100231
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118100231
Multi subunit type E3
BRCC complex
118100231
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
118100231
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
118100231
BRCA1-A complex
118100231
BRCA1-B complex
118100231
BRCA1-C complex
118100231
BRCA complex
118100231
FA (Fanconi anemia) pathway
Downstream FA components
118100231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-C3HC4_4
BRCT_2
zf-C3HC4_2
zf-RING_UBOX
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_3
zf-Nse
RTT107_BRCT_5
zf-RING_5
zf-RING_4
zf-MIZ
zf-RING_6
zf-ANAPC11
zf-PARP
zf-RING_10
PTCB-BRCT
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
118100231
NCBI-ProteinID:
XP_035000982
LinkDB
All DBs
Position
21:complement(14096511..14115690)
Genome browser
AA seq
1394 aa
AA seq
DB search
METPKASDVKKGISVLWETLQCPICLDLLTVPVSTKCDHQFCKFCIMKLVDNSKQNRANC
PVCKTKITKRSLQVSPGFQRLVAGLQDMIQAYEHDTGTNYFTGMSLQEKQLGVTDAEAIK
PPQNLSSGETAHTDLDYVENEDQDDLPRSHSSTIEAQNGFARLMELEDSTPLTTEHEGLD
SGLGEALPTSDKKLHSSADNLEPVETEMLETVEKASTHKTRGKLRSVKLESASLLPVAIP
DETEYQPLRKSSRKKQKTDLESAKILERRRKKSLEKVAEWLMKVPPEGSLELEKPDKDPD
DSDGCSSTSTIDVKQHLSDINSKREDRAKALEDHVFGAVYKRDRRGKRNSSRSLFVEPTI
IKHKTDSEDENRSDSEEEQLLTEDVNDSSDILKKAEQMEDLEENYVVGKDVIAESESEPQ
QLKRKSKKRMQNALQQVDSDLKEQAEAKSDKTEPKKPDRRKGKNTRSEKGKSARVSKPLV
LVGVKNGETNPKTRVKSEEVQVQIENYPSSEDQQTPIMRSTRRSRRLQLFAEEVQDGHKK
ANSRANVIEKDVNVAQQQEEVEGETPDKAESPKGGKLAKRNGCVYDEDLGGIENVESGKR
TRREQESIAEVQNLPNAETLSEATGPCSVPVVPSSPCPTEATVVGPTLENNNPTDQSSKN
IELKTSVCVITEKEEEKNDSELDTEQLLQSFKATKRKSFRLGGPKGKRSRTSVHENTQGA
EGEENDFVCSRVESAKTQTNKKTSGIIDQEALKDDENSLCNDLISPSISPILTRKSVEKP
DQVVVEALNPVTSSSGQDGPAGNCLSRNSQSSALTPNQVSKRGIESPQFVESGLRFTDVE
HEEVNEASKSSQIPNGQLDCSLKDAGKWKEMRDSISQKHSDNTAEHILVAESSLTPDGLV
TPLVLTVHGSGELSAHSPIKSNLRKKRRTQRLESSSESDESREELPTLTQIFGTSAHPAA
VTRDRGDSSEATGCEAACVPADAAERLSRPPACPSPDCANSSQGSVDLFGTPDECDAPVN
ENIDMESSQFSSEVLVTQQKIQMQKELVRLEKLMALVSEVLHEKEQSPAKETNPSSKTTG
PDTQEPLPCNQDARQDSDQKGVPEAEREPGTRASDGREVTESSVSQPVGVTQTTVQCSTH
TALSVKGTDASKTPVLSSAAKTLKNSNSPSDGQEDKENTTPPKDRTKAKLVLVSSGLGPN
EQIIVKKFAKRVGARVISQVTEEVTHIVMRTDEQLVCERTLKYFLGIAGRKWVVSFQWIS
ECFKQKKLLDESVFEVKGDVVNGPNHQGPSRARTTADSNLLMSGYSICFQGPFTDMTTDE
MEWMVELCGAAVVTDPLLLDSKQKSRQLVIVQPGPESSSSTFSRLLRQASVVTRGWLLDT
VATYTLQNFNNYSP
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgccaaaggcctcagatgttaaaaaggggatctcagtcctttgggagactctg
cagtgtccgatatgcttggatttattgacggtaccggtatctaccaagtgtgaccaccag
ttttgcaaattttgcataatgaaacttgtggacaactccaaacaaaaccgggccaactgt
ccagtgtgcaaaaccaagataaccaaaaggagtttgcaggtgagccctgggtttcagaga
cttgttgcaggactgcaggacatgatacaagcatatgaacatgacactggcacaaactat
ttcactggaatgtccctgcaagaaaaacagttaggtgtcacagatgcagaagccatcaaa
cctcctcaaaatttgtcatctggagaaacagcccacactgacctggactatgtggaaaac
gaagaccaagatgatcttccaaggtcccattcttcaactatagaagcccagaatggattt
gcaagactcatggaacttgaagactcgactcctttgactacagaacacgaaggcctggac
agcggccttggggaggctttgccgacgtctgacaagaaactgcacagctctgcagataat
ttggaaccagtagaaacagaaatgttagaaactgtggaaaaggcatcaacacataaaact
agaggcaaacttagatctgttaaattggagagtgcctcccttcttccggtagcaattcct
gatgagacagaatatcagcctttaagaaagtcttcgcggaagaagcagaaaacggatctg
gagtccgccaagattcttgagcggagacggaagaaaagtcttgaaaaagttgcagagtgg
ctgatgaaagttccacctgagggaagtctcgaattagaaaaaccagacaaagacccagat
gactctgatggctgttcttccacctctacaatagatgtaaagcaacaccttagcgatatt
aattctaagagagaggatcgtgccaaagcactcgaagaccatgtgttcggagccgtctac
aaacgagacagaagagggaagaggaacagctctcgttcactttttgttgagccaacaatc
ataaaacacaaaacagactctgaggatgaaaaccgaagcgactcagaggaagaacaactg
ctaacagaagacgtaaatgatagcagtgacattttaaaaaaagcagaacagatggaagac
ttggaggaaaattatgttgttggcaaagatgtgattgctgagtcggagtctgaaccacag
caactaaaaagaaagtcaaagaaaagaatgcaaaacgctctgcagcaggttgacagtgat
ttaaaggagcaagctgaggcaaagtcagacaaaactgagccaaagaagcctgacaggagg
aaaggtaaaaacacaaggtcagaaaaaggcaagtctgcaagagtgtcgaagccccttgtt
ctcgttggagttaaaaatggagaaaccaatccaaagactagagtgaagtcagaagaagtt
caggtacaaattgagaactatcccagcagcgaggaccaacaaacccccatcatgaggagc
accaggagaagcagaaggcttcagctctttgctgaggaagtccaggacggtcacaagaaa
gcaaactcgagagctaatgtaattgaaaaagatgtcaatgtcgctcagcagcaggaggaa
gttgaaggtgaaacaccggataaagcagaatcacctaagggtggaaagttggccaaaaga
aatggatgtgtttatgatgaagatttaggaggaattgaaaacgtggagtctggtaagaga
actcgccgagaacaagagtccattgctgaagtgcagaatttgccgaatgctgaaacgctc
tctgaagctactggaccttgttctgtcccagtggtcccaagttctccatgtccaacggaa
gcaactgtggttggtccaacacttgaaaataacaatccgactgatcaatcctcaaaaaac
attgagttgaaaacatcagtttgcgtgataacggagaaagaggaggaaaagaacgacagc
gagcttgacacagaacaactgctccagagcttcaaagccacgaagaggaaatctttccgt
ctcggtggtccgaaagggaaaaggagccgtacctcagtccatgaaaacacacaaggtgct
gaaggagaggaaaatgactttgtttgttctagagttgaatctgcaaaaacacagacgaac
aagaaaacatctggaatcatcgaccaggaggcactaaaagacgatgaaaactcattgtgt
aatgacttgatttctccttctatctcaccaatactgacaagaaaatcagttgagaaacca
gatcaagtggtggttgaagccttgaaccctgtcaccagtagttcaggtcaggacggtcct
gctggtaactgtctttccaggaacagtcagagcagcgccctcactcctaatcaagtctca
aaacgtggaattgaaagtcctcagttcgtagaatccgggctccgcttcacagatgttgag
cacgaggaggtaaacgaagcctcgaagagctctcaaatcccaaacggtcagcttgattgt
tcactgaaggatgctgggaaatggaaggagatgagagacagcatttctcaaaaacattca
gacaacacggctgaacatatcttagttgctgagtcttctttaactcctgacggcctggtg
acaccacttgtcctgacggtccatggaagcggagagctcagcgcacactcccccatcaag
agcaacctgaggaagaagagaaggactcagaggctggagtcttcatccgagtcagatgaa
tccagagaggaattacctacgttgactcaaatctttggaacgtcggctcatccggctgct
gtgacccgggatcggggagactccagtgaagccactggatgtgaggctgcatgtgttcca
gctgatgcagcagaacggttgagccgtccgcctgcgtgccccagccccgactgtgctaac
tccagccaggggtctgtggacttgttcggaacgccagatgaatgtgatgctccagtaaat
gaaaacattgacatggagtcatcacaattttcaagtgaggtccttgtcacacagcaaaag
atacagatgcagaaggagctggtgaggctggagaagctgatggctctggtgtcagaggtg
cttcatgagaaagagcaaagtcctgcgaaagagacaaatcccagcagcaaaaccaccggc
ccagacacccaggaacccctcccgtgtaaccaggatgcacgccaagattcagaccagaaa
ggcgttccagaggcagagcgagagcccggcacaagagcatctgatggaagagaggtcact
gagtccagcgtgtcacagcctgtcggcgttacacagactacagtgcagtgctccacacac
acagcgctgagtgtaaagggcactgacgcctccaagacgcctgttttaagctcagcagcc
aagacactgaagaacagtaattcaccatcggatggacaagaagacaaagaaaacaccact
cctccaaaagacagaactaaagccaagctggtgcttgtgtcgtctggattagggcccaat
gaacagataattgtgaaaaagtttgccaagcgagtcggggctcgtgtgatttcccaggtg
acagaggaggtcacacacatcgtcatgcgcacagatgaacagctggtgtgcgagcgcacg
ctgaagtacttccttggcatcgcgggcaggaagtgggtcgtgagcttccagtggatttca
gagtgcttcaaacaaaagaaactcctagatgagagtgtctttgaagtgaaaggcgacgta
gtgaacggaccgaaccaccagggcccctcaagagctcgaaccactgcagacagtaatctg
ctcatgagcggctacagcatctgcttccaggggcctttcacagacatgactacagatgaa
atggagtggatggtggagctctgtggagcagctgtagttacagatccacttctcctagac
agtaaacagaagtcccgtcagctggtcattgtacagcctggacctgagtcatcatcgtcc
accttcagccgtctcctcagacaggcgagtgtggtgacacgtggttggctcttggacaca
gtggcaacctacaccctccaaaacttcaacaactactcgccatga
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